Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1214 132 3e-26 seq108 127 1e-24 seq898 123 1e-23 seq19155 120 2e-22 seq1308 116 2e-21 seq35 116 2e-21 seq20499 114 7e-21 seq540 114 7e-21 seq832 111 8e-20 seq4 105 3e-18 >seq1214 Length=104763 Score = 132 bits (146), Expect = 3e-26 Identities = 92/104 (88%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||| | ||||| |||||| | |||||||||||||| |||||||||| ||||||| Sbjct 5941 AAATAGATTATTAAAAAAAAAATTGAAATTGGCCCATGAGGGGATCGAACCCGCGACCTT 6000 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 6001 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 6044 Score = 116 bits (128), Expect = 2e-21 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 19043 TAAAAAAGGATTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 19102 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 19103 CGCTCTAACCAACTGAGCTAATGGGCCG 19130 >seq108 Length=220355 Score = 127 bits (140), Expect = 1e-24 Identities = 88/99 (89%), Gaps = 6/99 (6%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||||||| ||| |||||||||| |||||||||| |||||||||||||||||| Sbjct 186764 AATAAAAAA---AATCCGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 186820 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACG 11536 ||||||||||| ||||||||||||||||||||||||||| Sbjct 186821 CACGACGCTCTAACCAACTGAGCTAATGGGCCGTCGACG 186859 >seq898 Length=356598 Score = 123 bits (136), Expect = 1e-23 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 170708 AACAAAAAATAATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 170649 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 170648 GACGCTCTAACCAACTGAGCTAATGGGCCG 170619 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 161031 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 161090 Query 11515 CTGAGCTAATGGGCCGTCGACGAT 11538 |||||||||||||||| || ||| Sbjct 161091 CTGAGCTAATGGGCCGATGAAGAT 161114 Score = 118 bits (130), Expect = 6e-22 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| ||||| || || |||||||||| |||||||||| |||||||||||||||||||| Sbjct 163316 AATTAAAAA-CATATATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 163258 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| ||||||||||||||||||||| Sbjct 163257 CGACGCTCTAACCAACTGAGCTAATGGGCCG 163227 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 164753 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 164694 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 164693 CTGAGCTAATGGGCCG 164678 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 167949 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 167890 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 167889 TGAGCTAATGGGCCG 167875 >seq19155 Length=433117 Score = 120 bits (132), Expect = 2e-22 Identities = 80/89 (90%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | ||| ||||||||| |||||||||| |||||||||||||||||||||| Sbjct 381654 AAAAAATTAGATTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 381713 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||||||||||| Sbjct 381714 ACGCTCTAACCAACTGAGCTAATGGGCCG 381742 >seq1308 Length=433268 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 44353 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 44412 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 44413 TGAGCTAATGGGCCGT 44428 >seq35 Length=387321 Score = 116 bits (128), Expect = 2e-21 Identities = 74/80 (93%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| | Sbjct 2011 AAATATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAA 2070 Query 11511 CCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||| Sbjct 2071 CCAACTGAGCTAATGGGCCG 2090 >seq20499 Length=922 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 534 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 475 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 474 TGAGCTAATGGGCCG 460 >seq540 Length=347873 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 65075 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 65134 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 65135 TGAGCTAATGGGCCG 65149 >seq832 Length=257005 Score = 111 bits (122), Expect = 8e-20 Identities = 73/80 (91%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| | Sbjct 255547 AAATATGGCCCATGAGTTGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAA 255606 Query 11511 CCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||| Sbjct 255607 CCAACTGAGCTAATGGGCCG 255626 >seq4 Length=730695 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 157644 TGGCCCATGTGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGATGCTCTAACCAAC 157703 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 157704 TGAGCTAATGGGCCG 157718 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 570512 TGGCCCATGTGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGATGCTCTAACCAAC 570453 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 570452 TGAGCTAATGGGCCG 570438 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261395665579252