Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_006635.1 Length=29874 Score E Sequences producing significant alignments: (Bits) Value seq726 230 4e-56 seq1315 178 2e-40 >seq726 Length=328569 Score = 230 bits (254), Expect = 4e-56 Identities = 280/382 (73%), Gaps = 0/382 (0%) Strand=Plus/Plus Query 10923 AATCTTGGTCCGAATAGTACTCATAACTGCTGATGTGTTGGCCATACTCCAACCACATTT 10982 |||||| | || || ||||| || | ||| ||||| | | | |||||||||| ||| Sbjct 206255 AATCTTTGAACGTATGGTACTGATGATGGCTTGTGTGTCGTCAGTCCTCCAACCACGTTT 206314 Query 10983 CTTTCCGTGTTGTTCAACGAATGTTAGCAAGACCATTCTCGCGTTTTCATCTAGTCCTGG 11042 |||| | ||||||||| || | || ||||| || || | ||||||| |||||| Sbjct 206315 AGCGCCGTATGTTTCAACGAACGTCAACAGAACCATCCTGGCATGCTCATCTAATCCTGG 206374 Query 11043 CCTGATGTCAATGTTCACGGAATTGAAAGCTTTTGCTTTTCCACCTGTCCATGTGCACAC 11102 ||||||||||| |||| ||| | ||||| || ||||| | || ||| | | ||||| Sbjct 206375 CCTGATGTCAAGGTTCCAAGAAGTAAAAGCCTTGGCTTTACATCCAGTCAACGAACACAC 206434 Query 11103 GCTCAATGCGTTCTGGCTGAAGACTTCTGTCAATAGCAAGCGTGCCAGCGTTCTGCAGTC 11162 |||||||||||| |||||| |||||||| |||| || || | ||| | ||||| Sbjct 206435 ACTCAATGCGTTCCTGCTGAACACTTCTGTTAATAACATTTTCGCTAACGTACGACAGTC 206494 Query 11163 GTTTGATTCTCTTATGCAACGTTTCAGCTCTTTCCTTTTGACGTAAACACCAGTTCGAGG 11222 ||||||| || | |||| ||| ||||| ||| | || ||||||| | ||||||||| Sbjct 206495 TTTTGATTTTCGTTTGCAGTTTTTAAGCTCCTTCTTGTTCACGTAAATATTAGTTCGAGG 206554 Query 11223 TATGAGCTCGACGAGTCCTCGCTTATTCTCTCGGTACTTTAGAGTCCACTTGGTATCATT 11282 ||||||||| ||||||||| || || | | ||||||| ||||||| | | || ||| Sbjct 206555 TATGAGCTCTACGAGTCCTGGCCCTTTTTTTTGGTACTTACGAGTCCATTCCGAATTATT 206614 Query 11283 TGGATCATATTCTGGTGGCAGA 11304 | ||||| | || || |||||| Sbjct 206615 TTGATCAAACTCAGGCGGCAGA 206636 >seq1315 Length=398715 Score = 178 bits (196), Expect = 2e-40 Identities = 202/270 (75%), Gaps = 1/270 (0%) Strand=Plus/Minus Query 6962 CTTCACGCTGTTGTAGCATGTTTTGCTCTTACATCCTGAATTTTGCTGCGTAAGCTATTA 7021 ||| || ||||| | ||| || ||||| | |||||||||||||| |||| ||||| Sbjct 56114 CTTTACTCTGTTTGACCATACTTAGCTCTCATTTCCTGAATTTTGCTACGTATACTATTG 56055 Query 7022 ATGACACTCTGCGAGTCGAACGGACTCCAAtttttttCAAGAGCATGTTCTTTAACGAAC 7081 || ||||| || ||| ||| || ||| ||||||| | ||||||| |||| |||||| Sbjct 56054 ATAACACTTTGACTGTCAAACACACCCCATTTTTTTTTACGAGCATGCTCTTCAACGAAA 55995 Query 7082 GATAATATAGTTATTCTCGCCTTCTCGTCTAACCCAGGTCTGACATTTGTGCCGCTTATA 7141 ||| || || ||||| | ||||||||| ||||| || || || | | || || Sbjct 55994 TTTAACATGACCATCCTCGCATGCTCGTCTAATCCAGGCCTAACCTTAATTCTGCCAATT 55935 Query 7142 TCGAAAGCGTTCGCTCTGACACTCGTTAATGAACAAACATTTAACGCACTCTGGGAAAAA 7201 || |||||||| || ||| | | ||||||||| || ||| ||||||| || | |||| Sbjct 55934 TCAAAAGCGTTTGCCCTGGCGCCCGTTAATGAGCAGACACTTAACGCTGTCCTAG-AAAA 55876 Query 7202 ATTTCTACTAATAACATTCGAGCTAACTCT 7231 ||||||||||| ||||||||||||||| || Sbjct 55875 ATTTCTACTAACAACATTCGAGCTAACCCT 55846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95441213036664