Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq785 219 7e-53 seq28865 156 7e-34 seq737 125 1e-24 >seq785 Length=235979 Score = 219 bits (242), Expect = 7e-53 Identities = 550/832 (66%), Gaps = 16/832 (2%) Strand=Plus/Minus Query 22 AGGAATTCATTGACTCTGACTTTCTTCACTACCTTTTGATAACGCTCATACACGTCTTTG 81 || |||||| |||| || ||||| | || ||||||||||| | || | |||| Sbjct 67311 AGAAATTCACTGACACTTACTTTGTCTGTTATGCTTTGATAACGCGAGTGGACATTTTTG 67252 Query 82 ATATCAAAGTAGACATTGGACGGGAAAAGAGTAACCAAATCCATGTGAAACTTTTTTCTC 141 ||||| || | ||||||| ||| |||| ||| ||||| || || ||||||||| || Sbjct 67251 ATATCTAAATCAACATTGGGCGGAAAAATAGTTACCAAGTCACCGTTAAACTTTTTCTTC 67192 Query 142 TTAGAAATGTTGTCGACGTACTTAGGTAAGGTCGGATATTTCTTTGATTCCTTTACACAA 201 | ||||| | || ||||| | | ||| |||||||| | | || || || || Sbjct 67191 TGTGAAATATATTCTGTGTACTCAATCAGGGTGGGATATTTTTCAAAATCTTTGACGTAA 67132 Query 202 TCAATGAACAGTTTGTATAGTGACAAAACTCTGTCGAACTCAAGCGAATTGATAGGTTCA 261 |||||| || ||||| || |||| ||||||||| ||||||||||| || | ||||| Sbjct 67131 CGAATGAATAGGTTGTACAGAGACAGAACTCTGTCAAACTCAAGCGATTTTAGTGGTTCG 67072 Query 262 AAAGTAACTTTNNNNNNNNNNNNNNNNNNNNNNNTGCTAATGACTACTTTCTTGGTATTC 321 | || | || || | || |||| | | || ||| Sbjct 67071 TATGTTATGTTAATTCTATTTTTATCATCAGGATTGTTGATAACTATTCGTCTCGT-TTC 67013 Query 322 TTTACCAA-TTCCGTGTAGAAAGATTTGTCTTGGTCGATAGCAAAATAGGGACGGAACGT 380 || | | ||| | || |||||||| || ||| |||| ||| |||| || || || Sbjct 67012 TTGGGCTAGTTCTGAATAAAAAGATTTAGATTTGTCAATAGTAAAGAAGGGTCGAAATGT 66953 Query 381 CTTTTCACAGATATCAAACGTGCCTGTCCCAGCTTCGGATGCCTCCAAGTCACCCTCAAA 440 ||| ||||| || ||| ||||| | || | | ||| || || || | Sbjct 66952 CTTGTCACATATTCTGAACATGCCTTTGCCTTCCTTAGATTTAGTCACATCGCCGGTGTA 66893 Query 441 GTGCATAAGGTGGACGAAGTCATTCAAATGAACTTTCTCCTCAAGAATATCGTCACGCAA 500 || ||| | ||| || | | |||||| | ||||| | |||| ||||| || |||| Sbjct 66892 GTTCATTAAGTGAACATATTTATTCAAGTTGACTTTTTGTTCAACGATATCCTC--GCAA 66835 Query 501 A--ATTCCCTTGTGATTTAACTTTAGGTAATTCAGCTTGTATAGATT-AGATGATTTTTC 557 | || ||||| || | |||||||||||||| |||||||||| | ||| || | Sbjct 66834 AGCATAAGTTTGTGGTTACATTTTAGGTAATTCAGAATGTATAGATTGTGCGGATGTTCC 66775 Query 558 AATTTCACTGACTAGAAAACCATCTACAGTCTTGAAGATTTTCTCCAACAAATAATAAA- 616 || ||| |||| ||||| || | ||| | ||||| || || ||||| | | |||||| Sbjct 66774 AA-TTCGCTGATGAGAAATCCGTTTACTTTTTTGAAAATCTTTTCCAATAGAAAATAAAC 66716 Query 617 -TTTTCTTTCTCCGTTTTTGGAtttttttCAAAGTCATTACGTAACTTAGTAGTTCTTTT 675 || ||||| |||| ||| ||| ||||||||||| ||||| || | | ||||| Sbjct 66715 TTTATCTTTGTCCG--GTTGAATTCGCTTCAAAGTCATGACGTATCTGATCAACTCTTTA 66658 Query 676 CGTTTCTCGATAGGCTTCAAATCTAGATCATAATTGAACCATG--TCAAAATTTCAATCA 733 ||||| | | | || || |||| |||||||| ||| | | || || | || Sbjct 66657 CGTTTTACAAATGAGGGCATGTCAAGATTGTAATTGAA--ATGCTTAAGTATCTCGACCA 66600 Query 734 TATAGCGCGCTACGCTATAATACCCTCTTAGCCGTTCCTGCTTGTAGTGTTGAGGATCAT 793 | | ||||||| ||| || ||| | || || ||| || | | ||| |||| | Sbjct 66599 TCCAATCAGCTACGCCGTAAAACATTCTCAAGCGCTCGTGCATGAAATTTTGTGGATTGT 66540 Query 794 TTTTAAAAATTCCTGAGGACAATTCCACGCAGTACCATAACGCAGTTGGTAG 845 ||| ||||| | ||||||||||| ||||||||||| ||||||||||| || Sbjct 66539 CTTTGAAAATGCACGAGGACAATTCAACGCAGTACCACAACGCAGTTGGCAG 66488 Score = 138 bits (152), Expect = 2e-28 Identities = 270/392 (69%), Gaps = 9/392 (2%) Strand=Plus/Plus Query 6018 GAATCAAATTACTGTACATCGTCACAAATGGCAAGATTAGCCGGGAAAGTATAGACGAAT 6077 |||| ||||| ||||||||| | || | || | ||| || ||| | | |||| || | Sbjct 65286 GAATAAAATTGCTGTACATCATAACGGACGGTATGATGAGT--GGATA-TGTAGAAGATT 65342 Query 6078 GTTTGGAATTGAATAAAGAAATAGATTATGAAATGGTTGTTTTCCATGCATTCAATGAAG 6137 |||| ||||||||| || | ||| | || |||| ||||| || ||||| ||||| ||| Sbjct 65343 GTTTTGAATTGAATGAAAACATACAGTACGAAACAGTTGTCTTTCATGCGTTCAACGAAC 65402 Query 6138 ACCCGGAAAAAATCGACCTTTTAGTAGCTGCACCTTTCTTCAAGAGCCGTTGCATCGTTT 6197 | | |||| ||||| | ||||||||| | || || ||||||||||| || || | Sbjct 65403 GTTTGAACGAAATTGACCTGTCAGTAGCTGCTGCATTTTTTAAGAGCCGTTGTATGGTAT 65462 Query 6198 ATCACAATACCGAACTTT--GTAACCGTACTCATATTTCCAAGGAGTTTGATTATGACAA 6255 | ||| ||| |||| | | ||| | |||||| | || ||||| || || || Sbjct 65463 ACAGAAATTACGAGCTTTTAGATAACGT--TGTTATTTCTGAAGATTTTGACTACGATAA 65520 Query 6256 GATCAGTAGCGACAACTTCGCAGTTGAAATGCAACAA-CTTATGTCTTATATTAAATTGA 6314 ||||| | || || || ||| ||||| | |||| || ||||| ||||| | |||| Sbjct 65521 GATCACTGTTGAAAATTTGCCAGCTGAAA-GAGACAATCTAATGTCGTATATCAGGTTGA 65579 Query 6315 AGTTCATCAATAAATTCAAACGAGACGCTGATGTTTGGCGAGAAATTGAAAAATTGCATA 6374 |||| |||| ||||| ||||| | || | | | | ||||| || || || | | Sbjct 65580 AGTTTATCAGTAAATACAAACAGAATGCACAAGCTCTGAACGAAATAGATAAGCTGAAGA 65639 Query 6375 ACCTAAGAAATCGAATGCTTAGAGAATTGTCA 6406 | || |||||||| || || |||||| || Sbjct 65640 AACTGAGAAATCGGCTGTTTGACGAATTGGCA 65671 >seq28865 Length=229 Score = 156 bits (172), Expect = 7e-34 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || | | | ||||| ||||||||||| |||||||| ||||| |||||| Sbjct 3 GCTAAGCGACACAGGAAAGTGCTTCGTGATAACATCCAGGGAATCACTAAGCCGGCTATC 62 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| || | || || || |||||| | || || | |||| || |||| Sbjct 63 CGTCGTTTGGCGCGAAGAGGAGGCGTAAAGCGTATTTCCGGTCTCATCTACGAGGAGACG 122 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | |||||| ||| |||||||| ||| ||| || |||||||||| Sbjct 123 CGTGGCGTCCTTAAGGTGTTCCTCGAGAACGTTATCCGTGACGCTGTCACCTATACCGAG 182 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||| || | ||||| |||||| ||||||| |||| || || Sbjct 183 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTTTACGC 226 >seq737 Length=158354 Score = 125 bits (138), Expect = 1e-24 Identities = 191/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || ||||| | | | ||| |||| ||||| ||||| || || ||||| ||||| Sbjct 54913 CGCGAAACGTCACAGAAAAGTTCTAAGAGACAACATTCAAGGTATTACGAAGCCTGCTAT 54854 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | |||| | || || || || || || | |||||||| |||| ||||| | Sbjct 54853 CCGCAGATTGGCCAGACGAGGCGGCGTAAAACGAATTTCTGGATTAATCTACGAAGAAAC 54794 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| ||||||| || || | | ||| || | || ||| | || || || Sbjct 54793 AAGAGGAGTTCTGAAGATTTTTCTAGAAAACGTCATACGAGACGCTGTTACGTACACAGA 54734 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||||| | || || || || | |||||| | |||||||| |||||||||||||| Sbjct 54733 GCACGCTAAAAGAAAAACAGTGACAGCTATGGATGTTGTCTATGCCTTGAAACGTCAAGG 54674 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | ||||||||||| | |||| || Sbjct 54673 GCGAACCCTGTATGGTTTTGGCGGGTAATTTT 54642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79047791819061