Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_006644.1 Length=16103 Score E Sequences producing significant alignments: (Bits) Value seq1489 96.9 4e-16 seq89 82.4 8e-12 >seq1489 Length=768087 Score = 96.9 bits (106), Expect = 4e-16 Identities = 116/151 (77%), Gaps = 10/151 (7%) Strand=Plus/Plus Query 7277 ATTTTTGACGTGATAACGTCTTATGAATTGATGAACACTAGCAGCACGCACAAATAAGTG 7336 |||||||||||||||||||||||| ||||||| |||| || || |||| | ||||| Sbjct 711200 ATTTTTGACGTGATAACGTCTTAT-AATTGATAAACAGCGGCTACATGCACGAGAAAGTG 711258 Query 7337 TCCCGTTCCATCTGAGCCAAAAGCGTTGGCTCGTGACACATATATTTCTCCTCTCGCGTG 7396 | |||| | || | || ||||| | || || |||| ||| ||| ||||||||| Sbjct 711259 TAACGTTTC-TC-GTGC---AAGCGA--GAACGCGATACATTTATCTCTTTTCTCGCGTG 711311 Query 7397 ACGTCAGAGCTAGCAGTTAGAATATTGTTCT 7427 ||||||||||||||| || ||||| ||||| Sbjct 711312 ACGTCAGAGCTAGCAATTTGAATA--GTTCT 711340 >seq89 Length=194056 Score = 82.4 bits (90), Expect = 8e-12 Identities = 109/149 (73%), Gaps = 13/149 (9%) Strand=Plus/Plus Query 7278 TTTTTGACGTGATAACGTCTTATGAATTGATGAACACTAGC----AGCAC--GCACAAAT 7331 |||||||| |||||||||||||| ||| ||| |||||| || || || |||| || Sbjct 147860 TTTTTGACTTGATAACGTCTTATAAATCGATTAACACTGGCTACGAGTACATGCACGAAA 147919 Query 7332 AAGTGTCCCGTTCCATCTGAGCCAAAAGCGTTGGCTCGTGACACATATATTTCTCCTCTC 7391 || |||| ||||| || ||||| | || ||| | | ||| |||| |||| Sbjct 147920 AAATGTCACGTTCGGCGTGC-----AAGCGA--GAACGCGACGCTTTTATCTCTCTTCTC 147972 Query 7392 GCGTGACGTCAGAGCTAGCAGTTAGAATA 7420 ||||||||||||||||||| || ||||| Sbjct 147973 ACGTGACGTCAGAGCTAGCAATTCGAATA 148001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51393380412166