Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_006654.1 Length=13597 Score E Sequences producing significant alignments: (Bits) Value seq146 172 5e-39 >seq146 Length=1266914 Score = 172 bits (190), Expect = 5e-39 Identities = 316/463 (68%), Gaps = 39/463 (8%) Strand=Plus/Plus Query 5471 AAAGCTATAATTAGAAATGAGTCATTGTGACTAACTGGCAGTAAACATGTTTTACCTTGC 5530 || |||||||||||| ||||||||| ||||| || |||| |||||| ||||| Sbjct 999050 AACGCTATAATTAGAGTTGAGTCATTCTGACTCACAGGCA-------TGTTTTGCCTTGT 999102 Query 5531 ACCGAATTAAAATTTGGATTGT-TCTCTGCTCGAAAGCTTTAAAATTCGTTAGTTAATAA 5589 | ||| |||||| ||||||| | || | |||||| ||| ||||||| || | | | Sbjct 999103 GGCCAATGAAAATTCGGATTGTGTATC-GATCGAAATCTTCAAAATTCCACAGCTCAGAC 999161 Query 5590 TATGACACTATCATTCCGGAACTTCGTCATAATTCGATAATTTTACtttttttAAGTGTA 5649 || ||| | ||| |||||| || | ||||| | | Sbjct 999162 TAAGACGCCTTCAACCCGGAAGTT----------------------TATTTTTGAAAAAA 999199 Query 5650 ATTTATGTTCTATGTTTTGTGAGGTTGTATCCGTATGTCAATGCATTGTTGCTCAGCGGA 5709 |||||| || || ||| || ||| |||| || ||| ||||||| || |||||||||| Sbjct 999200 ATTTATATTTCATACTTTATGTGGTAGTATTCGCTTGTTAATGCATCGTAGCTCAGCGGA 999259 Query 5710 ATATTTTTCAATCTAGCTGAATTTGATAAGTGATCTAAATGAGAATTTATTACAGTTAAC 5769 || ||| | || ||||||||| ||| | ||| | | ||||| |||||||| |||||| Sbjct 999260 ATTGTTT---AACTGGCTGAATTTAATAGGCGATTTGATTGAGATTTTATTACGGTTAAC 999316 Query 5770 ATTATTGTTAATCATTAACAAACTTCATAA--ATGAATAGCTTTCTAAATAATGAACAAA 5827 ||| | ||| |||| | ||| |||||| | || |||||| | ||| |||||| | Sbjct 999317 ATTGTAATTAGTCATCACTAAATATCATAAGCACGA--AGCTTTTTGAATCGTGAACAGA 999374 Query 5828 AAGTGTGATTAACTACCTAGAACCCGTCGCTTTTTT-AAGCTTCACACGAGACAAATTGC 5886 || |||||| ||| ||| | || | |||||||| || | | || || | | || Sbjct 999375 AATTGTGATCCACTCACTACAGCCTGCTGCTTTTTTCAAACGTGACGTGACATGTAATGT 999434 Query 5887 ATACACTTAAAACAAGTCAGAAAAATATTATCAATCTGAACAC 5929 |||||| ||||||||| |||||| |||| |||| ||||| Sbjct 999435 GTACACTGAAAACAAGTGTGAAAAAGATTACTCATCTAAACAC 999477 Score = 134 bits (148), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 7931 TTATTAATCTGTACAGATGAGGATCCATATCGGATTCCACCTCCATTCGGTTGTGCTTG- 7989 |||||||||||||||| ||||||||| || |||| |||||||||||||||| | ||| Sbjct 1000413 TTATTAATCTGTACAGTTGAGGATCCGTAATGGATATCACCTCCATTCGGTTGCGTTTGG 1000472 Query 7990 -----ATTTCCGTCAAATTTGAAGTTTTGATTTACGTGGTTTGTGTACGCTCCAAACATG 8044 | |||| | |||||||| |||||||| | | |||| |||||| |||| Sbjct 1000473 TTTTTACTTCCCACGAATTTGAATACTTGATTTATCAGATCTGTGATCGCTCCGAACACT 1000532 Query 8045 TTTGGGCCAACCGGATCGACGTTAAAAGTCATGCCGTTCTGATAAGTTTGGGATCCCAGT 8104 ||| ||| | | || || || |||||| | ||||| |||||||| || |||||||| Sbjct 1000533 TTTTGGCTACCTGGCTCAACTTTAAAATTGTTGCCGATCTGATAAACTTCGGATCCCACA 1000592 Query 8105 ATAATATCCCTTCCATCACCGGGTATCCGATCTGGAAACAGTTGTTCTTGG 8155 || || || ||| || | ||||||| ||| | || | |||| |||||| Sbjct 1000593 ATGATTCCCGTTCTATTGCTGGGTATCTGATTTTGAGTCGGTTG-TCTTGG 1000642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 43376959939560