Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq16383 122 2e-23 seq17838 100 6e-17 >seq16383 Length=499 Score = 122 bits (134), Expect = 2e-23 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 7268 ATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGAC 7327 ||| ||| || |||| ||||| |||||||||||||| || | ||| ||||||||||| Sbjct 351 ATGTCATATCACTATTAACATGTTCATCATAAATATGTTTTAAATTAATTTCATCTTGTT 292 Query 7328 GGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAG 7387 || || | | || || || |||||||||| | || || || ||| |||| | Sbjct 291 TAAAAAGTATAATTAAATTCGCGTTATCTCTAAATAACTGTTTAGGAATTTTACTATATG 232 Query 7388 TTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTG 7446 |||| || || |||| |||| ||||||| ||||| ||| ||| || | Sbjct 231 TTTGGTTTAGGTACAAGCAATCAATGAATTTGTGTCTTCCCATTGCA-AAATAATCACGC 173 Query 7447 ATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCA 7506 |||| || || |||||||||||||||||||||||||| |||| ||||||| || || Sbjct 172 ATGTTATTTTGATTTTCACAAGCAACATCGTCAAATATAATCACTGAGTTAGTTTTTGCG 113 Query 7507 TCTT 7510 |||| Sbjct 112 TCTT 109 >seq17838 Length=4899 Score = 100 bits (110), Expect = 6e-17 Identities = 382/578 (66%), Gaps = 30/578 (5%) Strand=Plus/Minus Query 16170 ACCAATTTTGACTGGGCCATAAAGGAACTATCAGGATTCCTTCCGCTTTATCTAGCT--T 16227 ||||| ||||| ||||| | || || || ||||| || ||||| || ||| | Sbjct 3391 ACCAAGGCTGACTCGGCCACACTGGGACAATTAGGATGCCGGTGGCTTTGTC--GCTAAT 3334 Query 16228 TATTTT-TTGAATTACTTTGGCAATTACTGCGAACGGTGGAAAAGCATAGAAAAACCACG 16286 ||||| |||| |||| | |||||| | || |||||||||||||||||||| | Sbjct 3333 AATTTTCTTGAGAGTCTTTAG-AATTACAGGAAATGGTGGAAAAGCATAGAAAAAATAGT 3275 Query 16287 GCCTCCAGCTAATCGTGAACGCGTCTATCGCGAAAGCTTTCGGATCCCTGTCCCATG-CA 16345 |||||| |||| || || || | || || || || | |||||||| | ||| | || Sbjct 3274 TACTCCAGTTAATAGTAAATGCATTAATGGCAAAGGCATCGGGATCCCTCTGCCACGACA 3215 Query 16346 CAGTAATTGATGCATTTGTTATTGAACTCTG-ACGCGAAGAGGTCTATTTCTGGGATACC 16404 || || ||| |||||| ||||| || | | ||||| | |||||| | ||| | || Sbjct 3214 CA-TATTTGTCGCATTTATTATT-AATACGGCTTGCGAATAAGTCTATATGGGGGTTGCC 3157 Query 16405 AAATATTTTAATTATCTTTTTGTATGCATAATCAGCTAGTTGCCATTCTGTATCACGATT 16464 |||| | ||| || ||| ||| ||| | | | || || |||||| |||| | | Sbjct 3156 AAATTTGGAAATAATAATTTCGTAAGCAGACTGCGATAATTCCCATTCGATATCTGGGT- 3098 Query 16465 TGACAAGCGTGACAATGAGTCCGCTTC--CA----CGTTGTCTTTAGATGCGATGTAGGA 16518 || | | | | || || || || || ||||||| || || || || Sbjct 3097 --GCA--CTTTCCGA-GATTCGGCATCGGCAATTTTGTTGTCTACGGAACGTATATAAGA 3043 Query 16519 TGCATAAACCCAGAGATCTCGACGTTCACACCAGTTCCATAGATCTCTCGCTAAGTCGTG 16578 |||| | | | | | | | | |||||||| | ||| | |||||| ||| | | | | Sbjct 3042 TGCAAAGATAAATATTTTCCTATGCTCACACCATTGCCAGATATCTCTAGCT-ACTTGAG 2984 Query 16579 TAGACCTTCTGATCTCG--TACCACCTAGTTTATTGATGTAAGCTAGCGTGGTTGTGTTA 16636 || | | || | | |||| || | ||||| |||| || || || ||||| Sbjct 2983 TA-AGATGGGGAAATTGGATACCGCCCATGCGGTTGATATAAGATATCGCTGTGGTGTTG 2925 Query 16637 TCTACTCTTAGCAATATTTCCGCGGAGTGTAAGTT-TTTTGCAAATAATTTTAGAGCTAT 16695 || | |||||||||||||| || | ||||| ||||||||||| ||| | |||||| Sbjct 2924 TCGATTCTTAGCAATATTT-GGCAGTTATAAAGTTGTTTTGCAAATATTTTCAAAGCTAT 2866 Query 16696 AAAAGCTGCTTTTAATTCTAAATAATTGATATGTAAAG 16733 ||| ||||| |||| || | ||||| ||||| ||| Sbjct 2865 AAATGCTGCCATTAACTCAAGGTAATT--TATGTGAAG 2830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97939523379258