Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq536 111 2e-19 >seq536 Length=598245 Score = 111 bits (122), Expect = 2e-19 Identities = 219/320 (68%), Gaps = 8/320 (3%) Strand=Plus/Plus Query 131863 TATGACTCCTGTTAAACCTATGTTGGCTGATGTATGCGAATCTCTAGAAAAAGCAATAGA 131922 |||||| ||||| ||||||| | ||||| | ||| ||||| |||||| || || | Sbjct 182610 TATGACCCCTGTCTTACCTATGCTTGCTGAAGCTTGCAAATCTATAGAAATGGCTATGAA 182669 Query 131923 TAAATATAAAGATGGAATGTATTCAGAGGTAAAATATGATGGGGAGCGTGTACAAATTCA 131982 |||| | |||| |||| |||||| | || |||||||| || | || ||| | || Sbjct 182670 GAAATGCCCAAATGGTATGTTCTCAGAGATTAAGTATGATGGAGAAAGAGTGCAAGTCCA 182729 Query 131983 TAAAAAAGATAATGTATACAATTATTTTAGTAGAAATTTAAAACCTGTTCTTACTCATAA 132042 |||||| | ||| | || ||| |||||| | | |||||| |||||| | ||||||| Sbjct 182730 TAAAAAGGGTAAGGAATTCAAGTATTTTTCTCGTGCTTTAAAGCCTGTTATGGCTCATAA 182789 Query 132043 AATTGATGGATTTGATAAACTG-TTGACTGATGCATTTCCCACAGCAAAAAACTTCATTT 132101 | | | |||| | | | | ||| | | |||||||| | | || || | |||| Sbjct 182790 AGTC-AGCCATTTTAAAGATTACTTGCCCCAAGCATTTCCAAAGGGTGAAGACATGATTT 182848 Query 132102 TAGATGCGGAATTAATAATGATAGATACAAAATCA---AATTCATTTTTACCATTTGGTT 132158 | ||||| ||| | | ||| ||||| || || || |||| ||||||||| Sbjct 182849 TGGATGCAGAAGTCTTGATGGTAGATGTTAATACAGGCAAGCCATTG---CCATTTGGTA 182905 Query 132159 CATTAGGTATACATAAAAAA 132178 | || |||||||||||| || Sbjct 182906 CTTTGGGTATACATAAACAA 182925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531701490121480