Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq28624 554 6e-153 seq6 93.3 5e-14 >seq28624 Length=432676 Score = 554 bits (614), Expect = 6e-153 Identities = 1198/1771 (68%), Gaps = 28/1771 (2%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||||||||| | ||||||||||| || | ||| |||||||| ||||| | | Sbjct 59682 GTGAATTGAATGGCGTTTGCGGCGGGTTTCGTCCGCAAATAATACATTCCAGTTTTCAAA 59623 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| ||| ||||| || || | ||| ||| | || || || | Sbjct 59622 CCCATCTTCCAAGCGTGGAAATGAATTGATGTCAATTTACCGTAATTTGGCTCAGCAACG 59563 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || || | ||||| ||||||||||| || || || |||||||||||||| | || Sbjct 59562 TGAATGTTAAACGATTGGCTTTGATCGATAAAAGCACCTCTGTCTGCAGCCATCTGAATT 59503 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 62233 | || || || || ||||| | ||||| || | ||| || | |||||| || | Sbjct 59502 GTAGTTTTGACTGATATCTCCCATACTGTTTTGTATAGCTCCCTGA-TATCTTTCGGTAT 59444 Query 62234 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290 || |||| |||||||| ||| || || || |||||| || || |||| Sbjct 59443 ACTTTCAATATTTTGAATGGAGCCATTATTGTGAATTATAAGATTCTTCATATCGTCATC 59384 Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350 ||| | | || || ||| ||| ||| ||||| |||| || || || ||||| || Sbjct 59383 CCACAGCTCGGCCTGTGTCAAATCTCGAAGAAGATGGTGATTTACGACCTGGAATTCGCC 59324 Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410 ||| || ||||| || || ||||| || |||| || | |||||||| || || Sbjct 59323 AGATAAAACTCTGCGCTGATATATATTTGAAGTGAACGGCTCAAAGGACTCATTGTTACC 59264 Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470 | |||||| ||||| || || || ||||| || || | || | |||||| | ||| Sbjct 59263 AAGAATTTGTGCAGTAGAAGCTGTAGGCATTGGAGCTAGTAACAGCGAATTTCTTAAACC 59204 Query 62471 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNN 62530 || | || ||||| ||||| |||| | ||| ||||| || |||| || Sbjct 59203 GTGTTTTGCTATTTTTTCTTTGAGAGTTGTCCAGTTCCATAGGTCCGTTGGCGTTTTCTC 59144 Query 62531 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATG 62589 ||| | |||||| ||||| || | | | ||| |||||| | ||||| Sbjct 59143 CCACATATCATATTGCAAAATACCCTTACTTGCAGGGCTA-CCTTCATATGAACTGTATG 59085 Query 62590 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 62649 | || | || ||||||| |||||| || || |||||||| || |||||||| || || | Sbjct 59084 GGCCATATTTTTCAGCTAATTCACAGCTTGCTTCTAATGCTCCATAATAAATAGTCTCAA 59025 Query 62650 AGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTATCAAATGGATAATTTAAG-AGAAT 62707 | || || || ||| | | | |||| || ||| | || || | | | | || Sbjct 59024 AAAT-TTGTTGGTTAAGTTTGATAGCTTTTTCACTTTCATACGG-TATTCTCATTATAAC 58967 Query 62708 AAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62767 ||| || || ||||||||||||||||||||||| ||||||||||||||| |||| || | Sbjct 58966 AAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATGTCTCATATTGGAATT 58907 Query 62768 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62827 || ||||| || | ||| |||||||||| || || |||||||| | |||| || Sbjct 58906 TTTTGCTTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATTCAAATTTTGTGTGAT 58847 Query 62828 TACTTTGACCACATCCTTCAGTTTGAGAAA---ATCAAATCGCCCATCTATTACAAACAT 62884 | ||| || || |||| ||| ||| || | || | || |||| ||||| Sbjct 58846 GATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAGATTTGTCTTCGTTTACGAACAT 58787 Query 62885 GTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62944 || || |||| |||||| | ||| || || ||||| |||| || ||| | |||| || Sbjct 58786 ATTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCAGAATCAGTGTATTCTAC 58727 Query 62945 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63004 || || || || ||||| || || || ||||| |||||||||||||| || |||||| | Sbjct 58726 AATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTTTGTTGGTTGCTCTTTCT 58667 Query 63005 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63064 ||| || | || || ||||| || ||||| || |||||||| | || | ||| | ||| Sbjct 58666 GTTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCCACTTGTGCTTCAACAAT 58607 Query 63065 CGCTTTCCAGACGACTCGAGCCTTTA--TTATAGATTTGTATCTCCTTTCTCTTTCGTAT 63122 |||||||| | | | ||||| | | | | || ||||| ||||| ||| ||| Sbjct 58606 AGCTTTCCACAAAATTTGAGCCCTAACTTGCTTGA--CAAATCTCTTTTCTTCTTCATAT 58549 Query 63123 AGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCAT 63180 | ||| || | | || || || || |||| |||| | | ||| || ||||| |||| Sbjct 58548 TTTTCATA-AAGCTTCTCAAATTCTTC-CCCCCAACAGTCTGCAAGACCGGGACAGTCAT 58491 Query 63181 CCGGACACATCA-ACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGG 63238 |||||||| | | | | |||| || | ||| |||| |||||| || || || || Sbjct 58490 GTGGACACATGAGGCTCCAATTCTCATTCTT--TTCAACTCTTTTCATGAACAGGTCTGG 58433 Query 63239 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63298 ||||| ||||| ||| || ||||||| | ||| || || || || |||||||| Sbjct 58432 GATCCAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCAGTGTTCTTTTT 58373 Query 63299 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63358 | ||| | || | | | ||||| ||||| ||||| | ||| ||||| | | |||| Sbjct 58372 TAAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCAAAAGCTCC 58313 Query 63359 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63418 ||| ||||| || || |||||||| | ||||| || |||||||| || || | |||||| Sbjct 58312 AGGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTACACCCGCAACAT 58253 Query 63419 TGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT 63478 |||| || ||| || || | |||||| || || | || || | || | || | || Sbjct 58252 GGGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCTTTAGCTCTTAT 58193 Query 63479 ATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63537 | | ||| || ||||| || || || ||||| || ||||| ||| | || | Sbjct 58192 GCAATGGACATGA-AGTCCTATGCCTCCAGCAGACTTAGAAATCAATGCACATTGCTTCA 58134 Query 63538 ACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63597 | |||||||||||||| || || |||||||| |||| || | ||||| || | Sbjct 58133 ATGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAAACAAGAGGATA 58074 Query 63598 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63657 ||| | || ||| | ||| ||| | |||||| ||||| || || |||||| Sbjct 58073 GTTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGTGAAGTATTTTT 58014 Query 63658 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 63717 | || | || ||||| || | ||| |||| || ||||| | ||||||||| | | Sbjct 58013 CTGATAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATGAATTCCAATAG 57954 Query 63718 CGACACGCATTAACATGTGCTGAGGTCTTTC 63748 || ||||| | |||||| || || | ||| Sbjct 57953 AAACTCGCATAAGCATGTGTTGGGGACGTTC 57923 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 63755 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 |||||||||||| ||||| || || ||| | |||||||||||||| ||||| ||||| || Sbjct 57836 CTTGTTGTTTATCTTCAATAAATATGATCTCTCCAAAGTTTTAAATCCAAAGTAGTTATA 57777 Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63865 | ||| ||||| || |||| ||| | || | |||| | || |||| ||| Sbjct 57776 TTTAAAATCTCGGTCATAAACAATTGCAGAATCGAGTCTCTCTTTATTTTT 57726 >seq6 Length=1691400 Score = 93.3 bits (102), Expect = 5e-14 Identities = 156/225 (69%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || | | ||| | ||| ||| || || | ||| ||||| || ||||| || | Sbjct 1115151 CCTCATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCT 1115210 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| || || || ||||| || ||||| || ||||| |||||||| | Sbjct 1115211 TCAGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAAATG 1115270 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33500 | | || | ||| || | | || | | || |||||||| | ||||| || Sbjct 1115271 CGACAATGCGCTCGCC--GAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGTC 1115328 Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 |||||||| || || || |||| ||||| | |||||| ||||| Sbjct 1115329 TGCCTTCTTCTTCACGCACGGCAGGGTTTCAACGGCATTGAAGAG 1115373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 ||||||||| ||||| | || || ||||| || || || |||||||||||||| || || Sbjct 1115783 ATACATTTCAGAATGGACATTCTCCATGGCAATTTGGAAACCGTAGAAACATCTCGCTTC 1115842 Query 33654 GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 || | || ||||| | | || || || | | ||| ||||| || || ||||| Sbjct 1115843 AGTTACTTGCACTTCCTGAGAGAAGCGCTCAACTAGATTCTCATTTACAATGCCGTCTGA 1115902 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 || ||||| || ||||||||||| || || || Sbjct 1115903 TGCAGCAAAGAAGGCCAATACATGCTTGATGAA 1115935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622713773897320