Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq28624 168 2e-36 >seq28624 Length=432676 Score = 168 bits (186), Expect = 2e-36 Identities = 1077/1708 (63%), Gaps = 31/1708 (2%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||||| || || || ||| | ||||| ||| ||||||| || ||| | ||| ||||| Sbjct 57923 GAACGTCCCCAACACATGCTTATGCGAGTTTCTATTGGAATTCATGGAGAAGATATTGAT 57982 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCAAC 363566 || || ||| | ||||| || ||| | | || ||||| ||||||| || || Sbjct 57983 GCAGCAATTAATACATACAA-CTTATTATCAGAAAAATACTTCACACACGCCAGTCCTAC 58041 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTC-TAAAAATGA 363625 | | | ||||| |||| ||||| | || ||||| |||||| | |||| Sbjct 58042 ACTTTTTTCTGCTGCTACTCCACGACCACAACTATCCTCTTG-TTTCTTGATTGCTATGA 58100 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 | || ||| || || ||||||| ||||||| | ||| | ||||| | ||||| ||| Sbjct 58101 AAGATGATAGTATTGAAGGTATCTATGACACATTGAAGCAATGTGCATTGATTTCTAAGT 58160 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCACAGAACAGTTACATTCG 363743 ||| || || || || | || || || || | | || | | ||||||| Sbjct 58161 CTGCTGGAGGCATAGGACT-TC-ATGTCCATTGCATAAGAGCTAAAGGTACTTACATTGC 58218 Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 || ||| || || ||||| || ||||||||| | || |||| | || || || Sbjct 58219 TGGAACAAATGGTGTTTCTAATGGTCTTGTTCCCATGTTGCGGGTGTACAATAACACAGC 58278 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 || || || || |||||||| || || || || ||||| || || || || || Sbjct 58279 AAGATATGTTGATCAGGGTGGCAATAAACGTCCTGGAGCTTTTGCCATCTACCTAGAACC 58338 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 || || ||| | || || ||| | || | || ||||| || || || ||| | Sbjct 58339 CTGGCACGCTGATGTATTCGAATTTTTGGATTTAAAAAAGAACACTGGTAAGGAAGAAGT 58398 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 ||||| | || ||||| ||||| || ||| | | |||| || ||||| | || || Sbjct 58399 ACGTGCCAGAGAACTGTTTTATGCTCTCTGGATCCCAGACCTGTTCATGAAAAGAGTTGA 58458 Query 363984 GGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA-TGTAT 364042 | |||||||| ||| | || ||||| || ||||| |||||| | || ||| | Sbjct 58459 AAAGAATGAGAATTGGAGCCTCATGTGTCCACATGACTGTCCCGGTCTTGCAGACTGT-T 58517 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA-AGGCTCGTAAG 364101 |||| || || | || || || ||||| |||||| | || || || | || | Sbjct 58518 GGGGGGAAGAATTTGAGAAGCTTTATGAAAAATATGAA--GAAGAAAAGAGATTTGTCAA 58575 Query 364102 ACAA-TTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAAC 364160 ||| || || || | | ||| || || | || | || | || || || || Sbjct 58576 GCAAGTTAGGGCTCAAATTTTGTGGAAAGCTATTGTTGAAGCACAAGTGGAAACTGGCAC 58635 Query 364161 ACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220 ||| | |||| | |||||||| || |||||| | ||| |||||| || | | || || Sbjct 58636 ACCATTTATGCTTTACAAAGACTCTTGCAACAGAAAGAGCAACCAACAAAATTTAGGCAC 58695 Query 364221 AATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGC 364280 ||| | ||||| || ||||| || ||| | |||||||| | | | || || || Sbjct 58696 TATTAAATGCAGCAATCTCTGTACGGAAATTGTAGAATACACTGATTCTGATGAAGTAGC 58755 Query 364281 CGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTA---CTTTTGA 364337 || || || | || || || || | ||| ||||| || | | ||| | | Sbjct 58756 AGTGTGCAATTTAGCATCTATTGCTTTAAATATGTTCGTAAACGAAGACAAATCTTATAA 58815 Query 364338 CCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTTATC 364395 | | | | | || || ||| | |||| || ||| | | || | || Sbjct 58816 CTTTGAAAAATTGAAAGAAGTCACCAAGATCATCACACAA--AATTTGAATAAAATCATT 58873 Query 364396 GACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATT 364455 || |||||||| || | |||||||| | ||| |||||| | ||| | || ||| Sbjct 58874 GAAGTTAATTATTACCCTGTCCCTGAAGCAAAAAATTCCAATATGAGACATAGACCTATT 58933 Query 364456 GGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCG 364515 ||| ||||||| || || | ||||| | |||| | || | | || | | ||| Sbjct 58934 GGTATTGGTGTTCAAGGATTAGCTGATGCTTTTGTTATAATGAGAATACCGTATGAAAGT 58993 Query 364516 CCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACT 364575 | ||| || || | | || ||||| || || |||| || ||| | Sbjct 58994 GAAAAAGCTATCAAACTTAACCAACAAATTTTTGAGACTATTTATTATGGAGCATTAGAA 59053 Query 364576 GCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTT 364635 || ||||| || || ||| | || ||| | | ||||| || |||| Sbjct 59054 GCAAGCTGTGAATTAGCTGAAAAATATGGCCCATACAGTTCATATGAAGGTAGCCCTGCA 59113 Query 364636 TCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGG 364695 |||| | || || | |||| | ||| | |||||| | | || |||||||||| Sbjct 59114 AGTAAGGGTATTTTGCAATATGATATGTGGGAGAAAACGCCAACGGACCTATGGAACTGG 59173 Query 364696 GATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTAC-AGCGCC 364754 || || || | || || ||| | || || || ||||| ||| || Sbjct 59174 ACAACTCTCAAAGAAAAAATAGCAAAACACGGTTTAAGAAATTCGCT-GTTACTAGCTCC 59232 Query 364755 CATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTAC 364814 ||||| || |||||||||||||| || || || ||||| |||| ||| || ||||| || Sbjct 59233 AATGCCTACAGCTTCTACTGCACAAATTCTTGGTAACAATGAGTCCTTTGAGCCGTTCAC 59292 Query 364815 AAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCT 364874 ||| | ||| ||| | ||| | || || ||||| | ||| || ||| | | || Sbjct 59293 TTCAAATATATATCAGCGCAGAGTTTTATCTGGCGAATTCCAGGTCGTAAATCACCATCT 59352 Query 364875 AGTCAAGGATCTTTCCGACCG--CGGGCTGTGGGGTGACAGCATGAAGAACTATATCATC 364932 || || ||| || | || |||||||| |||| |||||||| ||| || Sbjct 59353 --TCTTCGAGATTTGACACAGGCCGAGCTGTGGGATGACGATATGAAGAATCTTATAATT 59410 Query 364933 GCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTAC 364992 | |||||| || | || || ||| | | | || ||||| | | | | ||| Sbjct 59411 CACAATAATGGCTCCATTCAAAATATTGAAAGTATACCGAAAGATATCAGGGAGCTATAC 59470 Query 364993 AAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCT 365052 ||||| |||||||| || || | |||| ||| | ||||| || || | |||||| Sbjct 59471 AAAACAGTATGGGAGATATCAGTCAAAACTACAATTCAGATGGCTGCAGACAGAGGTGCT 59530 Query 365053 TTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGACTCAGCCAACCTCCGCCAAGC 365110 |||||| ||| ||||| ||||||||| ||||| | || |||||| | || || Sbjct 59531 TTTATCGATCAAAGCCAATCGTTTAAC--ATTCACGTTGCTGAGCCAAATTACGGTAAAT 59588 Query 365111 TTACATCCATGCATTTCTACGGGTGGAA 365138 | ||||| || |||||| ||| ||||| Sbjct 59589 TGACATCAATTCATTTCCACGCTTGGAA 59616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302853007542014