Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq852 242 3e-59 seq154 149 5e-31 seq397 114 1e-20 seq504 111 1e-19 seq27819 102 7e-17 >seq852 Length=562639 Score = 242 bits (268), Expect = 3e-59 Identities = 784/1198 (65%), Gaps = 37/1198 (3%) Strand=Plus/Minus Query 32171 GTCGCTGCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTG 32230 |||| ||| || || ||||||||||| ||||| || || ||||| | |||||| | Sbjct 33775 GTCGGTGCCTACTTCGTAGAATGGGGTGTGTATCCCCGGAAGTTCCCTGTGGACAAAATT 33716 Query 32231 CCGTTGCCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGA 32290 || | || || | ||||||| || ||||| || || || ||||| || || || || Sbjct 33715 CCAATTCCAAACCTCACGCATCTTTTATACGGGTTCATCCCAATTTGTGGGGGAGATGGC 33656 Query 32291 CTAAACGATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCA 32348 | ||||| | | || || | || |||||||| | || ||||||| || |||| Sbjct 33655 ATCAACGA--CAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTTTGCAACGGTCTTGCA 33598 Query 32349 AAGGCCGCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGC 32408 || || | |||||| ||||| |||| ||||| || |||||||| | || ||||| | Sbjct 33597 GCGGTCGAGAAGACTTCAAGGTGTCCATCCACGATCCATGGGCCGCTCTCCAGAAACCAC 33538 Query 32409 AGAAGGGCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGG 32468 | ||||| | || | ||||| ||||| ||||| |||||||| || ||| ||||| | Sbjct 33537 AAAAGGGATTATCATCTTGGAATGAACCTTACAAGGGCAACTTCGGTCAACTGATGTCAT 33478 Query 32469 CCAAGTTGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGG 32528 ||| || | ||| || ||||||| | || |||||||| || ||||| | | | Sbjct 33477 TGAAGCAAGCCAGACCTGACTTAAAAATCCTGCCGTCTATTGGAGGTTGGACTCTTGCTG 33418 Query 32529 ATCCCTT----TTATTTTATGCACGACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTC 32584 |||| || || ||| ||| || | | | || | || ||| || ||| |||| || Sbjct 33417 ATCCTTTCTTCTTCTTTGATG-ACAAAGTG--AAGAGGGACCGT-TTCGTCAATTCAGTT 33362 Query 32585 AAAGAGTTTTTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCG 32644 || || || | | |||||||||||||| || || || || |||||||| ||||| Sbjct 33361 AAGGAATTCCTGATGACGTGGAAATTCTTTGATGGTGTCGATATCGATTGGGAATTCCCT 33302 Query 32645 GGCGGCAAAGGTGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATT 32704 |||||||| || || ||||| ||||| ||| || | | || || | Sbjct 33301 GGCGGCAAGGGCGCTAACCCTAACCTCGG---CGGTCCTAAGGATGGCGAAACCTATGTG 33245 Query 32705 ATTTTGTTACAAGAATTGCGTTCTATGCTGGACGACCT-TCAATTGCAAACGGGCAAAAC 32763 | || | ||||| | ||| ||||| |||| | ||| ||| || ||||| | Sbjct 33244 CTCTTAATGAAAGAACTTCGTGAGATGCTCAACGAGTTATCATCTGC-TACTGGCAAGAA 33186 Query 32764 GTACGAGTTGACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGA 32823 ||||||| | ||| || || ||||| || ||||| ||| ||||| | || Sbjct 33185 GTACGAGCTAACTTCAGCTATCAGTGCTGGTTGGGACAAGATTCAAGTGGTCGACTA--C 33128 Query 32824 AGCCGCG--CAAAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCA 32881 || |||| || || ||| | || | || || |||||| |||||||| || || || Sbjct 33127 AGTCGCGCACAGAACTACATGGACCACATCTTCTTCATGAACTACGACTTCAAGGGAGCG 33068 Query 32882 TGGTCTAACACCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGAT 32941 ||||| ||| | | || | ||||| || ||||||||||| |||||||| | Sbjct 33067 TGGTCGAACGACACCCTAGGTCACCAGACATCTCTGTACGCTCCAGCCTGGAATCCTAAG 33008 Query 32942 GAATTGTACACCACAGATCACGCTGTTAAA---TTGTTAACAAGTCAAGGTGTAGCTTCT 32998 ||| ||||| || ||| || ||||||| |||||| | |||||| || | | Sbjct 33007 GAAACATACACGACTGATTTCGGTGTTAAATACTTGTTAGC---TCAAGGAGTCAATCCG 32951 Query 32999 TACAAAATCATTGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGTGGCTGGTTAT 33058 | || || | || || | || |||||||| || || ||||| || || || || Sbjct 32950 AAGAAGGTCGTAGTTGGTGTTGCTATGTACGGACGTGGATGGACTGGTGTTCACGGGTAC 32891 Query 33059 GACGGCGATAAttttttttCGGGTACTGCGAAAGGCCCCATTTCGGGCACGTGGGAAAAC 33118 || ||| | | || | || | ||| || || | || || ||| || || Sbjct 32890 GAAAACGACATTCCCTTCACAGGCAATGCTTCTGGTCCTGTCAAAGGTACATGGCAAGAC 32831 Query 33119 GGAGTTGTTGACTATCGCCAAATTAAAAACG-AATTAAACACG-----TATTTGTACAGG 33172 || || || || || | | ||| || | |||| || | | || | Sbjct 32830 GGTGTGGTGGATTACAGAGAGATTGCGAATGAAATTGCGCAGGGAAAATGGGAGTTCCAT 32771 Query 33173 TTTGACACAGCTGCTAAAGCAGCTTACGCTTTTAACAGTGCCAAAGGGGATTTGATTTCG 33232 | ||| | | ||| |||| | || | |||| | | | ||| ||| | ||| || Sbjct 32770 TATGATAGCGTCGCTCAAGCGCCGTATGTGTTTAGGCCTTCGACAGGTGATCTAATTACG 32711 Query 33233 TTTGACAGTG-TCGATTCTGTTTTGGCAAAAAGTGTGTATGTTGAGCAA-AATAATTTGG 33290 | |||| || ||| |||||| | | ||| || |||| | || || ||||| | | Sbjct 32710 TACGACAATGCACGA-TCTGTTATTGAGAAAGGTAAATATG-TCAGAAATAATAAGCTCG 32653 Query 33291 GTGGCGTGTTCGCTTGGGAAATAGACGCTGACAACGGCGATTTATTAAATGCTATGAA 33348 |||| | ||||| ||||| || ||||| || ||||| |||||||||||||||||||| Sbjct 32652 GTGGTCTTTTCGCGTGGGAGATCGACGCGGATAACGGAGATTTATTAAATGCTATGAA 32595 >seq154 Length=1330714 Score = 149 bits (164), Expect = 5e-31 Identities = 196/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 109222 CCCGTGCATCCCAAATACGCAACGGAAGTTGCACGTTTGCGCACTTTTGCAGAATGGCCT 109281 || ||||| || ||| || |||| | || ||| |||| || || || |||||| Sbjct 117180 CCGGTGCACCCGCGATATGCCTCGGAGGCGGCTCGTCTGCGAACCTTCAGCGACTGGCCT 117239 Query 109282 CGTGGTTTGAAACAGCAACCCGATAAACTAGCCGAGGCCGGGTTTTATTACACGGGCCAG 109341 ||| | || || | ||||| | | || || ||||| || | |||||| || || Sbjct 117240 CGTTGCATGGGCCAAAAGCCCGAGGAGTTGGCGGAAGCCGGATTCTTTTACACCGGGCAA 117299 Query 109342 GGCGATAAAACCAAATGTTTTTATTGTGACGGCGGTTTGAAAGACTGGGAGGCGGACGAT 109401 || |||||||| |||||||| || || ||||| ||| |||||||||||||| ||||| Sbjct 117300 GGGGATAAAACTAAATGTTTCTACTGCGACGGAGGTCTGAAAGACTGGGAGAACGACGAC 117359 Query 109402 GAGCCGTGGAAACTGCACGCGCGTTGGTTTGACCGTTGCCCTTACGTGTTGCTTGTTAAG 109461 | |||||| ||| ||||||||| |||||||| || ||| ||||||| ||| || || Sbjct 117360 GTCCCGTGGGAACAGCACGCGCGGTGGTTTGATCGATGCGCTTACGTTCAGCTGGTGAAA 117419 Query 109462 GGTCGAGATTATGTGCAAAAAATTGTAACGGA 109493 || ||||| || || || ||| || | |||| Sbjct 117420 GGCCGAGACTACGTTCAGAAAGTTATCTCGGA 117451 >seq397 Length=962699 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| ||||| | || || ||||| || ||| | ||| ||| | Sbjct 58666 AATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTTGAGCCATC 58607 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| || ||| | | |||||| ||||||| || || |||||| | || |||||| Sbjct 58606 CGATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGCATACCACCTGATCA 58547 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| |||||||| ||||||||||| | || | | ||||| || Sbjct 58546 GCAGCGATTGATTTTCGCGGGCAAGCAATTAGAAGACGGACGTACTCTTTCGGATTACAA 58487 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| |||||| | || | || ||| | || || ||||| Sbjct 58486 TATTCAAAAAGAATCTACTCTTCACCTCGTCTTGCGTTTACGTGGAGG 58439 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || ||||| ||||| || ||||||||||| |||| |||| | Sbjct 58209 ATGCAGATTTTCGTTAAAACTCTCACCGGTAAAACCATTACTCTCGAGGTGGAGCCTTCT 58150 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | |||||| |||||| || ||||| || | || || || Sbjct 58149 GACACCATAGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGTATTCCACCAGACCAA 58090 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| || | ||| || || ||||| ||||||| || || | || || ||| Sbjct 58089 CAAAGACTGATATTTGCTGGTAAGCAATTGGAAGATGGGCGCACTTTGTCAGACTACAAC 58030 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 || || ||||| |||||| | ||| | || || Sbjct 58029 ATCCAGAAAGAATCTACTCTTCATTTAGTATT 57998 >seq504 Length=80497 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || ||||| || || || ||||| | ||| ||| ||| | Sbjct 72661 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACTATTACATTAGAAGTTGAG-CCATC 72719 Query 115346 G-ACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 | | || ||| | | || ||| |||||| || ||||| || | || ||| || Sbjct 72720 GGATACAATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAGGGGATTCCTCCTGACCA 72779 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||| | ||| ||||| ||||| ||||||| | || || | || || || Sbjct 72780 ACAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCAGACTACAA 72839 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||| ||||| || ||| | ||| | |||||||||||| ||||||||| Sbjct 72840 CATTCAGAAAGAATCCACTCTGCATTTAGTGTTGAGATTGAGAGGAGGAA 72889 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || |||||||| || ||||| || || || ||||| | ||| ||| ||| Sbjct 72888 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACTATTACACTGGAAGTTGAG-CCAT 72946 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||||| ||| | || ||| |||||| || || || || | ||| ||| | Sbjct 72947 CTGACACTATTGAGAATGTCAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCTGACC 73006 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || | ||||| | ||||| |||||| | ||||||| | || || | || || | Sbjct 73007 AACAGCGTCTTATCTTCGCGGGTAAACAACTGGAAGATGGCCGTACACTGTCGGACTACA 73066 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||| || || || || ||| | ||| | |||||||||||| ||||||||| Sbjct 73067 ACATCCAGAAGGAATCCACTCTGCATTTAGTGTTGAGATTGAGAGGAGGAA 73117 >seq27819 Length=1354 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| ||||| || || ||||| || | ||| || ||| | Sbjct 175 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAA-CCATC 233 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | | || ||| |||||| || || || || | ||| ||| || Sbjct 234 TGATACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCTGACCA 293 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | || ||||| || || ||||||| | ||| | |||||||||| Sbjct 294 GCAGCGTCTCATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGATTATAA 353 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||| || ||| | ||| | || ||||||||||||||||| Sbjct 354 TATCCAGAAAGAATCCACTTTGCATTTAGTATTGAGATTGCGAGGAGG 401 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || ||||| || || ||||| || | ||| ||| ||| | Sbjct 631 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACATTAGAAGTTGAG-CCATC 689 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | ||||| ||||| || ||||| || | || ||| || Sbjct 690 AGACACAATTGAGAATGTAAAGGCTAAAATCCAAGACAAAGAGGGGATTCCTCCTGACCA 749 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || ||||||||| ||| ||||| ||||||||||||| || | |||| || || Sbjct 750 ACAGCGACTTATTTTTGCCGGCAAGCAATTAGAAGATGGACGCACTCTTTCCGACTACAA 809 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| || || || ||| | ||| | || ||||||||||||||||| Sbjct 810 CATTCAGAAGGAATCCACTCTTCATTTAGTATTGAGATTGCGAGGAGG 857 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| ||||| || || ||||| || | ||| || ||| | Sbjct 1087 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAA-CCATC 1145 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| | | | || ||| |||||| || ||||| || | ||| ||| || Sbjct 1146 TGACACTATCGAGAATGTCAAAGCCAAAATTCAGGACAAAGAGGGGATTCCCCCTGACCA 1205 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||| | ||| ||||| ||||| ||||||| | || || | || || || Sbjct 1206 ACAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCGGACTACAA 1265 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || || || || ||| | ||| | || || |||||||||||||| Sbjct 1266 CATCCAGAAGGAATCCACTCTGCATTTAGTATTAAGATTGCGAGGAGG 1313 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 115370 AAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAA 115429 |||||| || || || || | ||| ||| ||||| | ||||| | ||| ||||| Sbjct 31 AAAATTCAGGACAAGGAGGGAATTCCCCCTGACCAGCAGCGTCTTATCTTTGCCGGCAAG 90 Query 115430 CAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||||| | ||| | | || || ||||| || || || || ||| | ||| Sbjct 91 CAATTAGAAGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCAACTCTTCAT 150 Query 115490 ATGGTGTTGAGATTGCGAGGAGG 115512 | || ||||||||||||||||| Sbjct 151 TTAGTATTGAGATTGCGAGGAGG 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425188602829240