Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq28624 549 2e-151 seq6 100 4e-16 >seq28624 Length=432676 Score = 549 bits (608), Expect = 2e-151 Identities = 1197/1772 (68%), Gaps = 30/1772 (2%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||||| | ||||||||||| || | ||| |||||||| ||||| | | Sbjct 59682 GTGAATTGAATGGCGTTTGCGGCGGGTTTCGTCCGCAAATAATACATTCCAGTTTTCAAA 59623 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| ||| ||||| || || | ||| ||| | || || || | Sbjct 59622 CCCATCTTCCAAGCGTGGAAATGAATTGATGTCAATTTACCGTAATTTGGCTCAGCAACG 59563 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || || | ||||| ||||||||||| || || || |||||||||||||| | || Sbjct 59562 TGAATGTTAAACGATTGGCTTTGATCGATAAAAGCACCTCTGTCTGCAGCCATCTGAATT 59503 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 62088 | || || || || ||||| | ||||| || | ||| || | |||||| || | Sbjct 59502 GTAGTTTTGACTGATATCTCCCATACTGTTTTGTATAGCTCCCTGA-TATCTTTCGGTAT 59444 Query 62089 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 || |||| |||||||| ||| || || || |||||| || || |||| Sbjct 59443 ACTTTCAATATTTTGAATGGAGCCATTATTGTGAATTATAAGATTCTTCATATCGTCATC 59384 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| | | || || ||| ||| ||| ||||| |||| || || || ||||| || Sbjct 59383 CCACAGCTCGGCCTGTGTCAAATCTCGAAGAAGATGGTGATTTACGACCTGGAATTCGCC 59324 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 ||| || ||||| || || ||||| || |||| || | |||||||| || || Sbjct 59323 AGATAAAACTCTGCGCTGATATATATTTGAAGTGAACGGCTCAAAGGACTCATTGTTACC 59264 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 | |||||| ||||| || || || ||||| || || | || | |||||| | ||| Sbjct 59263 AAGAATTTGTGCAGTAGAAGCTGTAGGCATTGGAGCTAGTAACAGCGAATTTCTTAAACC 59204 Query 62326 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNN 62385 || | || ||||| ||||| |||| | ||| ||||| || |||| || Sbjct 59203 GTGTTTTGCTATTTTTTCTTTGAGAGTTGTCCAGTTCCATAGGTCCGTTGGCGTTTTCTC 59144 Query 62386 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATG 62444 ||| | |||||| ||||| || | | | ||| |||||| | ||||| Sbjct 59143 CCACATATCATATTGCAAAATACCCTTACTTGCAGGGCTA-CCTTCATATGAACTGTATG 59085 Query 62445 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 62504 | || | || ||||||| |||||| || || |||||||| || |||||||| || || | Sbjct 59084 GGCCATATTTTTCAGCTAATTCACAGCTTGCTTCTAATGCTCCATAATAAATAGTCTCAA 59025 Query 62505 AGATCTTCTTATTTAGATC--TTGCGCTTCCAGGCTATCAAATGGATAATTTAAG-AGAA 62561 | || | | || || | | || || || || ||| | || || | | | | || Sbjct 59024 AAATTTGTTGGTTAAGTTTGATAGCTTTTTCA--CTTTCATACGG-TATTCTCATTATAA 58968 Query 62562 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 62621 ||| || || ||||||||||||||||||||||| ||||||||||||||| |||| || Sbjct 58967 CAAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATGTCTCATATTGGAAT 58908 Query 62622 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62681 ||| ||||| || | ||| |||||||||| || || |||||||| | |||| | Sbjct 58907 TTTTTGCTTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATTCAAATTTTGTGTGA 58848 Query 62682 TTACTTTGACCACATCCTTCAGTTTGAGAAA---ATCAAATCGCCCATCTATTACAAACA 62738 | | ||| || || |||| ||| ||| || | || | || |||| |||| Sbjct 58847 TGATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAGATTTGTCTTCGTTTACGAACA 58788 Query 62739 TGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 62798 | || || |||| |||||| | ||| || || ||||| |||| || ||| | |||| || Sbjct 58787 TATTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCAGAATCAGTGTATTCTA 58728 Query 62799 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 62858 || || || || ||||| || || || || || |||||||||||||| || |||||| Sbjct 58727 CAATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTTTGTTGGTTGCTCTTTC 58668 Query 62859 TGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 62918 |||| || | || || ||||| || ||||| || |||||||| | || | ||| | || Sbjct 58667 TGTTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCCACTTGTGCTTCAACAA 58608 Query 62919 TCGCTTTCCAGACGACTCGAGCCTTTA--TTATAGATTTGTATCTCTTTTCTCTTTCGTA 62976 | |||||||| | | | ||||| | | | | || ||||||||||| ||| || Sbjct 58607 TAGCTTTCCACAAAATTTGAGCCCTAACTTGCTTGA--CAAATCTCTTTTCTTCTTCATA 58550 Query 62977 TAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGT-CCAGTCCAGGACATTCA 63034 | | ||| || | | || || || || |||| |||| | | | || || ||||| ||| Sbjct 58549 TTTTTCATA-AAGCTTCTCAAATTCTTC-CCCCCAACAGTCTGCAAGACCGGGACAGTCA 58492 Query 63035 TCCGGACACATCA-ACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAG 63092 | |||||||| | | | | |||| || | ||| |||| |||||| || || || | Sbjct 58491 TGTGGACACATGAGGCTCCAATTCTCATTCTT--TTCAACTCTTTTCATGAACAGGTCTG 58434 Query 63093 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63152 | ||||| ||||| ||| || ||||||| | ||| || || || || ||||||| Sbjct 58433 GGATCCAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCAGTGTTCTTTT 58374 Query 63153 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63212 | | ||| | || | | | ||||| ||||| ||||| | ||| ||||| | | ||| Sbjct 58373 TTAAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCAAAAGCTC 58314 Query 63213 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63272 |||| ||||| || || |||||||| | ||||| || |||||||| || || | ||||| Sbjct 58313 CAGGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTACACCCGCAACA 58254 Query 63273 TTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAA 63332 | |||| || |||||| || |||||| || || | || || | || | || | | Sbjct 58253 TGGGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCTTTAGCTCTTA 58194 Query 63333 TATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63391 | | | ||| || ||||| || || || ||||| || ||||| ||| | || Sbjct 58193 TGCAATGGACATGA-AGTCCTATGCCTCCAGCAGACTTAGAAATCAATGCACATTGCTTC 58135 Query 63392 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 63451 || || |||||||| || || ||||||||||| |||| || | ||||| || Sbjct 58134 AATGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAAACAAGAGGAT 58075 Query 63452 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTT 63511 | ||| | || ||| | ||| ||| | |||||| ||||| || || ||||| Sbjct 58074 AGTTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGTGAAGTATTTT 58015 Query 63512 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63571 || || | || ||||| || | ||| |||| || ||||| | ||||||||| | Sbjct 58014 TCTGATAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATGAATTCCAATA 57955 Query 63572 GCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 | || ||||| | |||||| || || | ||| Sbjct 57954 GAAACTCGCATAAGCATGTGTTGGGGACGTTC 57923 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 |||||||||||| ||||| || || ||| | |||||||||||||| ||||| ||||| || Sbjct 57836 CTTGTTGTTTATCTTCAATAAATATGATCTCTCCAAAGTTTTAAATCCAAAGTAGTTATA 57777 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 | ||| ||||| || |||| ||| | || | |||| | || |||| ||| Sbjct 57776 TTTAAAATCTCGGTCATAAACAATTGCAGAATCGAGTCTCTCTTTATTTTT 57726 >seq6 Length=1691400 Score = 100 bits (110), Expect = 4e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||| | | |||||| ||||| | || ||||||||| ||||| | || || ||||| Sbjct 1115753 ATCTCTGATATATGTGTCAATGAGCAGGGAATACATTTCAGAATGGACATTCTCCATGGC 1115812 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || |||||||| ||||| || || || | || ||||| | | || || || Sbjct 1115813 AATTTGGAAACCGTAGAAACATCTCGCTTCAGTTACTTGCACTTCCTGAGAGAAGCGCTC 1115872 Query 33041 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100 ||| ||| ||||| || || ||||| || ||||| || ||||||||||| || || Sbjct 1115873 AACTAGATTCTCATTTACAATGCCGTCTGATGCAGCAAAGAAGGCCAATACATGCTTGAT 1115932 Query 33101 AAA 33103 || Sbjct 1115933 GAA 1115935 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/225 (69%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || | | ||| ||||| ||| || || | ||| ||||| || ||||| || | Sbjct 1115151 CCTCATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCT 1115210 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| |||||||| ||||| || || || || ||||| || ||||| | Sbjct 1115211 TCAGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAAATG 1115270 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 32857 | | || | ||| || | | || | | || |||||||| | ||||| || Sbjct 1115271 CGACAATGCGCTCGCC--GAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGTC 1115328 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 |||||||| || || || |||| || || | ||||| ||||| Sbjct 1115329 TGCCTTCTTCTTCACGCACGGCAGGGTTTCAACGGCATTGAAGAG 1115373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633394570169200