Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq852 298 6e-76 seq154 91.5 2e-13 >seq852 Length=562639 Score = 298 bits (330), Expect = 6e-76 Identities = 545/789 (69%), Gaps = 17/789 (2%) Strand=Plus/Plus Query 51657 TCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACAGTGTGGTCTGGTAGCCC 51716 || || ||||| |||| | || ||||| || ||| |||| | ||||||| || Sbjct 32991 TCAGTCGTGTATGTTTCCTTAGGATTCCAGGCTGGAGCGTACAGAGATGTCTGGTGACCT 33050 Query 51717 AGATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCAAC 51776 || | ||| |||||||| |||||||| ||||||||||||| ||| |||| |||| Sbjct 33051 AGGGTGTCGTTCGACCACGCTCCCTTGAAGTCGTAGTTCATGAAGAAGATGTGGTCCATG 33110 Query 51777 TGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGATGGCG 51836 | |||| || ||| ||||||||| |||||||| || || | || || ||||| || Sbjct 33111 TAGTTCTGTGCGCGACTGTAGTCGACCACTTGAATCTTGTCCCAACCAGCACTGATAGCT 33170 Query 51837 CTGGTCAACAGGTACGAACGGTTCGTGGCGGCGCTCAACTCGTCGAGCATGTCGCGCAGC 51896 || | | |||| | || || | ||||||| |||||| || || || Sbjct 33171 GAAGTTAGCTCGTACTTCTTGCCAGTAGCAGATGATAACTCGTTGAGCATCTCACGAAGT 33230 Query 51897 TCGGTCAA-AAGCGTCACGTACGTCGCACCATCGCGATCGGGATCGCCCAGGTCGGGATT 51955 || ||| ||| | ||| || || | ||||| | ||| |||| |||| || || Sbjct 33231 TCTTTCATTAAGAG-CACATAGGTTTCGCCATCCTTA---GGACCGCCGAGGTTAGGGTT 33286 Query 51956 GGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACTTCCAAGT 52015 ||||| |||||||| || || ||||| |||| ||||| || || ||||| ||||| || Sbjct 33287 AGCGCCCTTGCCGCCAGGGAATTCCCAATCGATATCGACACCATCAAAGAATTTCCACGT 33346 Query 52016 CAGCAGAAACTCGCGAACCGATTCGACGAA--GGTTGCGCGTTTGCTCGCGTCGTGCAGG 52073 || ||| || || ||| || | |||||| ||| | | || || ||| | | | Sbjct 33347 CATCAGGAATTCCTTAACTGAATTGACGAAACGGTCCCTC-TTCACTTT-GTCATCAAAG 33404 Query 52074 AAGAAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGCGAAGGA 52133 |||||||| ||||| | || |||||||| || || || ||||| || || | ||| Sbjct 33405 AAGAAGAAAGGATCAGCAAGAGTCCAACCTCCAATAGACGGCAGGATTTTTAAGTCAGGT 33464 Query 52134 TTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGATCGTTCCAGGCC 52193 |||| | || | |||||| || || ||||| |||||||| || || ||||| | Sbjct 33465 CTGGCTTGCTTCAATGACATCAGTTGACCGAAGTTGCCCTTGTAAGGTTCATTCCAAGAT 33524 Query 52194 GAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCACCTTAAAG 52253 || | || || || |||||||| || || ||||| |||||||| || | |||||| ||| Sbjct 33525 GATAATCCCTTTTGTGGTTTCTGGAGAGCGGCCCATGGATCGTGGATGGACACCTTGAAG 33584 Query 52254 TC----CGACCTGCCCACGCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGGTTT 52309 || ||||| || ||| ||||||||||| |||| ||||||| ||||| || Sbjct 33585 TCTTCTCGACC-GCT---GCAAGACCGTTGCAAAGCTTGGAAACTGCCTTCGATTTCCTT 33640 Query 52310 CAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATGCGA 52369 || |||||||||||||| || || || || || || ||||| ||||| | ||||||| Sbjct 33641 CAAACTGTCGTTGATGCCATCTCCCCCACAAATTGGGATGAACCCGTATAAAAGATGCGT 33700 Query 52370 CAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTCGAC 52429 ||||| || | || | || || || || || || || || |||||||| || Sbjct 33701 GAGGTTTGGAATTGGAATTTTGTCCACAGGGAACTTCCGGGGATACACACCCCATTCTAC 33760 Query 52430 AAAGTAGGC 52438 |||||||| Sbjct 33761 GAAGTAGGC 33769 >seq154 Length=1330714 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/175 (73%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 38476 AGTTGGCCGAGGCCGGCTTCTACTATTC-GGGCACCGGAGACCAGGTCAAATGTTTCTTT 38534 ||||||| || ||||| |||| || | ||||| || || | |||||||||| Sbjct 117265 AGTTGGCGGAAGCCGGATTCTTTTACACCGGGCAAGGG-GATAAAACTAAATGTTTCTAC 117323 Query 38535 TGCGGCGGCGGCCTTAAGGACTGGGAGCCTGCGGACGATCCGTGGGCGCAGCACGCGCGC 38594 |||| ||| || || || ||||||||| | |||| ||||||| ||||||||||| Sbjct 117324 TGCGACGGAGGTCTGAAAGACTGGGAGAACGACGACGTCCCGTGGGAACAGCACGCGCGG 117383 Query 38595 TGGTTCGACAGGTGCGCTTACGTGCTCACC--GTCAAAGGCGCCGACTACGTTCA 38647 ||||| || | ||||||||||| ||| | || |||||| ||||||||||| Sbjct 117384 TGGTTTGATCGATGCGCTTACGT--TCAGCTGGTGAAAGGCCGAGACTACGTTCA 117436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537401753360920