Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6 197 2e-45 seq775 134 2e-26 seq994 132 5e-26 seq1371 131 2e-25 seq2179 123 3e-23 seq166 123 3e-23 seq396 114 1e-20 seq1242 107 2e-18 seq1456 89.7 6e-13 seq624 89.7 6e-13 seq201 89.7 6e-13 seq42 89.7 6e-13 >seq6 Length=1691400 Score = 197 bits (218), Expect = 2e-45 Identities = 181/226 (80%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 ||||| || ||||| || || | ||| ||||||||||||||||||||||||||||| || Sbjct 1115753 ATCTCTGATATATGTGTCAATGAGCAGGGAATACATTTCAGAATGGACATTCTCCATGGC 1115812 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| |||||||||||||| ||||| || | |||||||| ||||| || | ||| Sbjct 1115813 AATTTGGAAACCGTAGAAACATCTCGCTTCAGTTACTTGCACTTCCTGAGAGAAGCGCTC 1115872 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || ||||| ||||| || || || || ||||| ||||| || ||||||| |||||| || Sbjct 1115873 AACTAGATTCTCATTTACAATGCCGTCTGATGCAGCAAAGAAGGCCAATACATGCTTGAT 1115932 Query 93535 AAAATGTTTCTCATCATCTTT-AAGCTTATCCCAATCGGATAGATC 93579 || || ||||| ||||| |||| | |||||||| || || || Sbjct 1115933 GAAGTGCCTCTCACAGTCTTTCAAGC-TGTCCCAATCTGACAGGTC 1115977 Score = 149 bits (164), Expect = 7e-31 Identities = 174/234 (74%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 93111 AACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTT 93170 ||||| | || || || ||||| ||||||||||| || || || || | || || |||| Sbjct 1115149 AACCT-CATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTT 1115207 Query 93171 TCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAA 93230 |||| |||||||||||||| |||||||| ||||| ||||| || || || || || |||| Sbjct 1115208 TCTTCAGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAA 1115267 Query 93231 ATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290 |||| ||||| || ||| | || |||| || || ||| ||||| | | ||||| | Sbjct 1115268 ATGCGACAATGCGCTCGCCGAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGT 1115327 Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 | || || ||||| | || || || ||||| | || || || ||| |||||| Sbjct 1115328 CTGCCTTCTTCTTCACGCACGGCAGGGTTTCAACGGCATTGAAGAGGAAATCTC 1115381 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 || ||||||||||||||||||||||| || || || ||||||||||| | ||| ||||| Sbjct 1116381 TCAACTTCTTCGACAGTCCAAAACGAAGCCTCGGCCTTTTTGTACATTTGCCAGATGTCC 1116440 Query 93650 TGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTAGT 93709 |||| ||||| || || ||||| ||||| || || || || | |||||| || Sbjct 1116441 GGATACTGAATGGGGAAGATGACGAAACGGCGTGGATTGTCGCGGAGAAGCGGCTCCAGC 1116500 Query 93710 TGTGGGTCAAAC 93721 || ||||| ||| Sbjct 1116501 TGGGGGTCGAAC 1116512 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/158 (73%), Gaps = 5/158 (3%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 |||||| ||||| ||||||||||||||||| || | || || ||| || || || Sbjct 1113804 TTAGAATTCTGCGTCTAGTGTAAATACATTATCCATGCGA---TTTGCCATCACTCCCCA 1113860 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| ||||| || || ||||| || || |||||||| |||||||| ||||| ||| | Sbjct 1113861 TTTCTGGTACTCTCCTACTTTCTTCTCGAAGAAATTGGTCTTTCCCTCCAAGCTGATCAA 1113920 Query 92862 ATTCA-CTAGT-GATTGGATTCTTGGCGTTATAATACT 92897 |||| ||| || ||| ||||| | || |||| || Sbjct 1113921 GTTCATAAAGTCGAATGGGTTCTTAGTATTGTAATGCT 1113958 >seq775 Length=370927 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 135681 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 135740 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||||||| Sbjct 135741 GTGGGTTCGAACCCCACACCTGACAAAT 135768 >seq994 Length=188957 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 127930 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 127989 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 127990 GTGGGTTCGAACCCCACACCTGACAAA 128016 >seq1371 Length=291724 Score = 131 bits (144), Expect = 2e-25 Identities = 101/117 (86%), Gaps = 6/117 (5%) Strand=Plus/Minus Query 126252 CGCTTCTATTTACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT 126310 ||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 198535 CGCTTCT---TACAAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGT 198479 Query 126311 TCCC--TCGGGAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 |||| ||||||||||||||||||||||||||||||| | || |||| |||| Sbjct 198478 TCCCGAGAGGGAGCGTGGGTTCGAACCCCACACCTGACAGACCTTTTTTGGGTTTTT 198422 >seq2179 Length=151062 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 77340 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGCAAGGGAGC 77281 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||| |||||| |||||| Sbjct 77280 GTGGGTTCGAATCCCACATCTGACA 77256 >seq166 Length=401824 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 110472 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGCGAGGGAGC 110413 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||| |||||| |||||| Sbjct 110412 GTGGGTTCGAATCCCACATCTGACA 110388 >seq396 Length=191584 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 169514 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 169573 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||| ||| || |||||| Sbjct 169574 GTGGGTTCGAATCCCGCATCTGACA 169598 >seq1242 Length=731986 Score = 107 bits (118), Expect = 2e-18 Identities = 76/85 (89%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTA-AGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||||| ||| |||||||||| || || |||||||||| | ||||| Sbjct 359721 AGTCAGGTTGGCCGAGTGGACTATGGCGCCAGATCTACAGTTCTGGTTCCCGTTAGGGAG 359780 Query 126322 CGTGGGTTCGAACCCCACACCTGAC 126346 |||||||||||| |||||||||||| Sbjct 359781 CGTGGGTTCGAATCCCACACCTGAC 359805 >seq1456 Length=525349 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/85 (85%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGA-TCTGGTTCCC---TCGGGA 126320 |||||||||||||||||||||||||||||||||| || |||||||||| || | Sbjct 163855 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATGATTGATTCTGGTTCCCGAAAGGGAA 163914 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 ||||||||||||| ||| ||||||| Sbjct 163915 GCGTGGGTTCGAATCCCGCACCTGA 163939 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/85 (84%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGA-TCTGGTTCCC---TCGGGA 126320 ||||||||||||||||||||||| | ||||||||| || |||||||||| || | Sbjct 192942 AGTCAGGTTGGCCGAGTGGTCTATGTCGCCAGATTATTGATTCTGGTTCCCGAAAGGGAA 192883 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 ||||||||||||| ||| ||||||| Sbjct 192882 GCGTGGGTTCGAATCCCGCACCTGA 192858 >seq624 Length=767321 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/85 (85%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGA-TCTGGTTCCC---TCGGGA 126320 |||||||||||||||||||||||||||||||||| || |||||||||| || | Sbjct 627131 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATGATTGATTCTGGTTCCCGAAAGGGAA 627190 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 ||||||||||||| ||| ||||||| Sbjct 627191 GCGTGGGTTCGAATCCCGCACCTGA 627215 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/85 (85%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGA-TCTGGTTCCC---TCGGGA 126320 |||||||||||||||||||||||||||||||||| || |||||||||| || | Sbjct 710821 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATGATTGATTCTGGTTCCCGAAAGGGAA 710762 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 ||||||||||||| ||| ||||||| Sbjct 710761 GCGTGGGTTCGAATCCCGCACCTGA 710737 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/85 (84%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGAT-TTAAGATCTGGTTCCC---TCGGGA 126320 |||||||||||||||||||||||||||||||||| | |||||||||| || | Sbjct 461686 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATGATTGTTTCTGGTTCCCGAAAGGGAA 461745 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 ||||||||||||| ||| ||||||| Sbjct 461746 GCGTGGGTTCGAATCCCGCACCTGA 461770 >seq201 Length=1228182 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/85 (85%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGAT-TTAAGATCTGGTTCCC---TCGGGA 126320 |||||||||||||||||||||||||||||||||| | | |||||||||| || | Sbjct 52286 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATGATTGGTTCTGGTTCCCGAAAGGGAA 52345 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 ||||||||||||| ||| ||||||| Sbjct 52346 GCGTGGGTTCGAATCCCGCACCTGA 52370 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/85 (85%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGAT-TTAAGATCTGGTTCCC---TCGGGA 126320 |||||||||||||||||||||||||||||||||| | | |||||||||| || | Sbjct 217209 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATGATTGGTTCTGGTTCCCGAAAGGGAA 217150 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 ||||||||||||| ||| ||||||| Sbjct 217149 GCGTGGGTTCGAATCCCGCACCTGA 217125 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/85 (85%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGAT-TTAAGATCTGGTTCCC---TCGGGA 126320 |||||||||||||||||||||||||||||||||| | | |||||||||| || | Sbjct 365550 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATGATTGGTTCTGGTTCCCGAAAGGGAA 365609 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 ||||||||||||| ||| ||||||| Sbjct 365610 GCGTGGGTTCGAATCCCGCACCTGA 365634 >seq42 Length=536698 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/85 (85%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGA-TCTGGTTCCC---TCGGGA 126320 |||||||||||||||||||||||||||||||||| || |||||||||| || | Sbjct 137980 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATGATTGATTCTGGTTCCCGAAAGGGAA 138039 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 ||||||||||||| ||| ||||||| Sbjct 138040 GCGTGGGTTCGAATCCCGCACCTGA 138064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556652137297480