Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq852 197 1e-45 seq27819 113 3e-20 seq504 100 2e-16 seq397 98.7 7e-16 >seq852 Length=562639 Score = 197 bits (218), Expect = 1e-45 Identities = 435/649 (67%), Gaps = 11/649 (2%) Strand=Plus/Plus Query 84081 TAGTTTACCACGGCAATCTTGTCGTAACCCGCACTAATAGCGCTTGTTAATTCGTAAACC 84140 |||| ||||| ||||||||| |||| ||||| ||||| |||| ||||| | Sbjct 33129 TAGTCGACCACTTGAATCTTGTCCCAACCAGCACTGATAGCTGAAGTTAGCTCGTACTTC 33188 Query 84141 CTGCCAGTTTGCGATTCTAGCTCGTCTAACATTGCGCGCAGTTCCTCTAATATTAAAATG 84200 ||||||| ||| || ||||| | ||| | || ||||| | | || | | Sbjct 33189 TTGCCAGTAGCAGATGATAACTCGTTGAGCATCTCACGAAGTTCTTTCATTAAGAGCACA 33248 Query 84201 TATGTTTTGGCGTCACGTTCAGCATCCCCCAACGACGGGTTGGCTCCTTTGCCTCCCGGA 84260 || |||| | | || | || | | || | ||||| || || ||||| || || Sbjct 33249 TAGGTTTCGCCATCC---TTAGGACCGCCGAGGTTAGGGTTAGCGCCCTTGCCGCCAGGG 33305 Query 84261 AATTCCCAATCGATGTCTACACCGTCGAAAAATTTCCATACTTGTAAAAACTCCTTAACC 84320 |||||||||||||| || ||||| || || |||||||| | || |||||||| Sbjct 33306 AATTCCCAATCGATATCGACACCATCAAAGAATTTCCACGTCATCAGGAATTCCTTAACT 33365 Query 84321 GAATTTACAAAAACGTTTCTTTTTTCAACATTGTGCATGAAATAA----AACGGGTCCGA 84376 ||||| || ||| || || || || |||| ||| ||| || || || || | Sbjct 33366 GAATTGACGAAACGGTCCCTCTTC---ACTTTGT-CATCAAAGAAGAAGAAAGGATCAGC 33421 Query 84377 CAACGTCCATCCTCCTATGGACGGAAGAATCTTTAGGTGCGGGTTCGCCAATTTAGCTGC 84436 | ||||| ||||| || ||||| || || |||| || || | || || || Sbjct 33422 AAGAGTCCAACCTCCAATAGACGGCAGGATTTTTAAGTCAGGTCTGGCTTGCTTCAATGA 33481 Query 84437 CATCAATTGTCCAAAATTGCCTTTATACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGG 84496 ||||| ||| || || ||||| || || ||||| ||||||| || | |||||||| || Sbjct 33482 CATCAGTTGACCGAAGTTGCCCTTGTAAGGTTCATTCCAAGATGATAATCCCTTTTGTGG 33541 Query 84497 CTTTTGTACGGCGGCCCACGGATCGTGGATGGCAATTTTAAAATCCGCACGTCCCCTGCA 84556 || || | |||||||| ||||||||||||| | || || || | || || ||||| Sbjct 33542 TTTCTGGAGAGCGGCCCATGGATCGTGGATGGACACCTTGAAGTCTTCTCGACCGCTGCA 33601 Query 84557 CGATCGTTGCAGAGATTCGAAACTACCGGGTATCACTTTGAGAGCATCGTTTATTCCATT 84616 || ||||||| || || |||||| || || | || | | ||||| || |||| Sbjct 33602 AGACCGTTGCAAAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCGTTGATGCCATC 33661 Query 84617 ACCGCCGCAAATGGGTATGAAACCGTACAACAAGTGTGATAAATTTGGCAAGGGAACTTT 84676 || || ||||| || ||||| ||||| || | || | | ||||| | |||| ||| Sbjct 33662 TCCCCCACAAATTGGGATGAACCCGTATAAAAGATGCGTGAGGTTTGGAATTGGAATTTT 33721 Query 84677 GTCTACGGGAAAATTGCGCCCGTACACTCCCCATTCAACAAAATACGCA 84725 ||| || || || || || ||||| |||||||| || || || ||| Sbjct 33722 GTCCACAGGGAACTTCCGGGGATACACACCCCATTCTACGAAGTAGGCA 33770 >seq27819 Length=1354 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||| | || ||||| ||||| || | ||| || | || Sbjct 631 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACATTAGAAGTTGAGCCATCA 690 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| || |||||||| | ||| ||||| Sbjct 691 GACACAATTGAGAATGTAAAGGCTAAAATCCAAGACAAAGAGGGGATTCCTCCTGACCAA 750 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| ||||||| ||||| ||||| ||| |||||||| | ||| | |||| ||||| Sbjct 751 CAGCGACTTATTTTTGCCGGCAAGCAATTAGAAGATGGACGCACTCTTTCCGACTACAAC 810 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| ||||||||| | ||||| | || |||||||| Sbjct 811 ATTCAGAAGGAATCCACTCTTCATTTAGTATTGAGATTGCGAGGAGG 857 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || || || ||||| || ||||| ||| | | Sbjct 1087 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAACCATCT 1146 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || |||||||| | || ||||| Sbjct 1147 GACACTATCGAGAATGTCAAAGCCAAAATTCAGGACAAAGAGGGGATTCCCCCTGACCAA 1206 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | ||||||||||| ||||| ||| | |||||| || || | || ||||| Sbjct 1207 CAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCGGACTACAAC 1266 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| ||||| ||| | |||||| | || |||||||| Sbjct 1267 ATCCAGAAGGAATCCACTCTGCATTTAGTATTAAGATTGCGAGGAGG 1313 >seq504 Length=80497 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || ||| | || ||||| || ||||| ||||| || | | Sbjct 73116 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACTATTACACTGGAAGTTGAGCCATC 73175 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || |||| |||||| || ||||| || | ||| |||| Sbjct 73176 GGATACAATTGAGAATGTTAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 73235 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | ||||||||||||||||| || || |||||| | ||| | |||| ||||| Sbjct 73236 ACAACGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTCTCCGACTACAA 73295 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| ||||||||| | ||| | ||| || |||| || Sbjct 73296 CATCCAGAAGGAATCGACTCTTCATTTAGTACTTCGTCTAAGAGGTGG 73343 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||| | |||||||| || || |||||||| |||||| | ||| | |||| | Sbjct 72548 ACCAGCAGCGTCTTATCTTCGCCGGTAAACAACTGGAAGATGGACGCACTCTCTCCGACT 72607 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||| ||||||||||| ||||||||| | ||| | ||| | ||||||| Sbjct 72608 ACAATATCCAGAAGGAATCCACTCTTCATTTAGTACTTCGTCTGAGAGGAGG 72659 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||| | || ||||| || ||||| ||||| || | | Sbjct 74124 ATGCAGATCTTTGTCAAGACACTCACTGGCAAGACTATTACACTGGAAGTTGAGCCTTCG 74183 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||| || |||||||| | ||| ||||| Sbjct 74184 GATACAATTGAGAATGTGAAAGCTAAAATCCAAGACAAAGAGGGGATTCCTCCTGACCAA 74243 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| ||||||| ||||| ||||| || || |||||| || | |||| ||||| Sbjct 74244 CAGCGACTTATTTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 74303 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAAT 22071 || ||||||||||| ||||| ||| ||||| | | | | || ||| ||||||||| Sbjct 74304 ATCCAGAAGGAATCCACTCTGCATTTGGTACTCAGACTTAGGGGTGGAAATTAATAAT 74361 >seq397 Length=962699 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| | || || |||||||| ||| ||||| |||| | | Sbjct 57525 ATGCAGATCTTTGTTAAAACCCTGACCGGTAAAACCATCACCTTGGAAGTGGAACCTTCT 57466 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| || ||||| || | || | | || Sbjct 57465 GACACCATTGAAAATGTGAAGGCCAAGATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 57406 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| |||||||||| ||||| ||||||||||||||| || || |||| || || Sbjct 57405 CAGCGACTTATCTTCGCTGGTAAACAACTAGAAGATGGGCGCACATTGTCCGACTATAAC 57346 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || || || |||||| ||||||| ||| | || || || Sbjct 57345 ATCCAGAAAGAGTCCACCCTTCATCTGGTATTGCGTCTCCGTGGTGG 57299 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || ||||||| | || || ||||||||||| | || ||| | | Sbjct 58209 ATGCAGATTTTCGTTAAAACTCTCACCGGTAAAACCATTACTCTCGAGGTGGAGCCTTCT 58150 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || ||||||||| | || | ||||| Sbjct 58149 GACACCATAGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGTATTCCACCAGACCAA 58090 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || |||||||| || ||| | |||||| ||| || | || ||||| Sbjct 58089 CAAAGACTGATATTTGCTGGTAAGCAATTGGAAGATGGGCGCACTTTGTCAGACTACAAC 58030 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||||||||||||| | ||||||||| | || || || Sbjct 58029 ATCCAGAAAGAATCTACTCTTCATTTAGTATTACGTCTCCGTGGTGG 57983 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 || ||||||||| ||| | ||||| ||||| || ||||| || ||| ||||| || | Sbjct 58669 CACAATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTTGAGCC 58610 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || | || ||||||| || || || || |||| | Sbjct 58609 ATCCGATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGCATACCACCTGA 58550 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || ||| || | || || || ||||| ||| ||||||| | ||| | | ||||| Sbjct 58549 TCAGCAGCGATTGATTTTCGCGGGCAAGCAATTAGAAGACGGACGTACTCTTTCGGATTA 58490 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||| || |||||||||||||| | || || |||||||| ||||| Sbjct 58489 CAATATTCAAAAAGAATCTACTCTTCACCTCGTCTTGCGTTTACGTGGAGG 58439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357993961006858