Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq863 123 6e-25 >seq863 Length=559 Score = 123 bits (136), Expect = 6e-25 Identities = 234/340 (69%), Gaps = 7/340 (2%) Strand=Plus/Minus Query 3142 GATTATTTTTTCATGCAGCTGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCTGC 3201 ||||| || | || | | ||||| ||||||||| |||||| | | | |||| || Sbjct 335 GATTACTTCTACACGAACTTGCACACGCAAAACTTTTACGCATTCCGGTTCTTTATTTGT 276 Query 3202 GAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAGGC 3261 || | |||||||| ||||||| |||| |||||||| |||||| || |||| | | | Sbjct 275 GAAGTACTAAACTTCATCAACGTCGTCGGACAGATATATTTCATGGATTTCTTTTTGGAC 216 Query 3262 GAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAGGAAGCCGCCCATCCG 3321 | || |||| |||||| | || ||||| ||| || | | | | Sbjct 215 GGCGAATTTTCCACATACGGACGTGACGTGGTTCGCTTCA--CAG--AGATGGA-ACCGG 161 Query 3322 AACATGACGA--ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACA 3379 | || ||| | || ||| || || || || | | | ||| ||| || || |||| Sbjct 160 AGGATCGCGAGGATCCGATGGCACGGGTGTTCCCCAAAGTGACTAAATGCACCTTCCACA 101 Query 3380 AATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACG 3439 |||||||||||||||| || || | || | ||| ||||||||| || | ||| |||| Sbjct 100 AATACGGTCCTTCGGGAACCGTGCAGAAGTTCGACGGACTCTGCGTCTTGCCGTTGAACA 41 Query 3440 TGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTT 3479 | |||||||||||||| ||| | ||||| ||||||||||| Sbjct 40 TCGTCAACGAGAAGATATACGTGTTCCTGTGGTTCTGGTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12475908139500