Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 107 4e-18 >seq6 Length=1691400 Score = 107 bits (118), Expect = 4e-18 Identities = 131/178 (74%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| || || | |||||| ||||| || ||||| | ||||| || ||||| Sbjct 1114676 AGGGCCTTCACACGGACTTCGCCTGTCTAATGTTCAAG---CACCTGGTCCAGAAGCCGA 1114620 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 |||| || ||| | ||||||| ||| || |||| |||||| |||||||||||| Sbjct 1114619 GCAAGGCGCTGGTGCTACAGATCATCAAGGACGCGGTGGCCATCGAGCAGGAGTTCCTCA 1114560 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 || | ||||||||||| |||| ||||||||||| ||||||||||| ||||||| Sbjct 1114559 CGGACGCGCTGCCCGTGCGCCTGCTCGGCATGAACTGCGACCTCATGTCTGAGTACAT 1114502 Score = 89.7 bits (98), Expect = 1e-12 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||| | || || |||| ||| | ||||||||||| |||||||| || | Sbjct 1115373 CTCTTCAATGCCGTTGAAACCCTGCCGTGCGTGAAGAAGAAGGCAGACTGGGCCCTGCAG 1115314 Query 42669 TGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||| | || | | | ||||| ||||||||| | | || || ||| | || || || Sbjct 1115313 TGGATAGCCAG-CAAGTCTGCAACATTCGGCGAGCGCATTGTCGCATTTGCTGCTGTAGA 1115255 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 ||||||||| ||||| ||| || || || || || ||||| ||| Sbjct 1115254 GGGCATCTTTTTCTCTGGCAGTTTTGCGTCAATATTTTGGCTGAAG 1115209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943985344297520