Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq504 91.5 1e-13 seq27819 84.2 2e-11 >seq504 Length=80497 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/236 (69%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||| | || ||| | ||| || ||| || |||||||||||||| |||| | Sbjct 72887 CCTCCTCTCAATCTCAACACTAAATGCAGAGTGGATTCTTTCTGAATGTTGTAGTCTGAC 72828 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || | || |||||||||||||||||||| || || || || || || || Sbjct 72827 AGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGA 72768 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCA---GTA---GAT 34074 | | |||||||||| | | |||| |||| ||||| | ||| ||| ||| Sbjct 72767 ATCCCCTCTTTGTCC-TGAATTTTAGCTT--------TCACATTTTCAATTGTATCCGAT 72717 Query 34075 ---TCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||| | || || || || || || ||||| ||||||||||| ||||| Sbjct 72716 GGCTCAACTTCTAATGTAATAGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 72661 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/237 (68%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||||| | || || | ||| || ||| || ||||| |||||||| || | Sbjct 74123 ACCTCCTCTCAATCTCAATACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGA 74064 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || | || |||| |||||||||||||||||||| || || || || || || || Sbjct 74063 CAGTGTACGGCCGTCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGG 74004 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||||||||| |||||| ||| |||| | ||| ||| || | Sbjct 74003 AATCCCCTCTTTGTCTTGAATTTTGGCCTT---------CACATTTTCAATAGTGTCAGA 73953 Query 34080 T---TCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || ||| || || || |||||||| ||||| ||||||||||| ||||| Sbjct 73952 TGGCTCAACCTCCAATGTGATGGTCTTTCCGGTGAGTGTCTTCACAAAGATCTGCAT 73896 >seq27819 Length=1354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| || | | || | ||| || ||| |||||||| |||||||| || | Sbjct 1314 ACCTCCTCGCAATCTTAATACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGA 1255 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || | || | || |||||||||||||||||||| || || || || || || || Sbjct 1254 CAGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGG 1195 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC---ACACTATCAGTAGATTC 34076 | | |||||||||| | | |||| |||| || | || | | | |||| | ||| Sbjct 1194 AATCCCCTCTTTGTCC-TGAATTTTGGCTT--TGACATTCTCGATAGTGTCAGATGGTTC 1138 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || || || ||||| || ||||| |||||||| ||||| Sbjct 1137 AACTTCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396917335361554