Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq27819 158 3e-33 seq397 123 6e-23 seq504 118 3e-21 seq87 100 7e-16 >seq27819 Length=1354 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | |||||| | ||| | ||| |||||| ||||||||||| |||| | Sbjct 1085 CCACCTCTTAGACGAAGTACTAAATGCAAGGTGGATTCTTTCTGGATATTATAATCGGAG 1026 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| || || || || |||||||| |||||||| || | || Sbjct 1025 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 966 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || ||||| ||||| ||||| || ||||| || | ||| | ||| ||| Sbjct 965 ATTCCCTCCTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCAACT 906 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 905 TCCAAAGTGATGGTCTTCCCGGTGAGGGTCTTAACGAAGATCTGCAT 859 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || | ||| | ||| | ||| | ||| |||||| ||||||||||| |||| | Sbjct 401 CCTCCTCGCAATCTCAATACTAAATGCAAAGTGGATTCTTTCTGGATATTATAATCGGAG 342 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| || || || || |||||||| |||||||| || | || Sbjct 341 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 282 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || ||||| ||||| ||||| || ||||| || | ||| | ||| ||| Sbjct 281 ATTCCCTCCTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCAACT 222 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||||||||| || || ||||| || |||||||| Sbjct 221 TCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 175 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | |||||| | ||||| || ||| || ||||| || ||||||| | Sbjct 629 CCACCTCTTAGACGAAGTACTAAATGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAG 570 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| ||||| || || || ||||| ||||||||||| | || Sbjct 569 AGGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGGGGA 510 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCT 288423 |||||||| || ||||| ||||| |||||||| ||||| || | || |||| || Sbjct 509 ATTCCTTCCTTGTCCTGAATTTTAGCTTTCACATTTTCAATTGTGTC---CGATGGCTCA 453 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || || || ||||| ||||| |||||||| Sbjct 452 ACTTCTAATGTAATAGTCTTGCCAGTAAGGGTCTTAACGAAGATCTGCAT 403 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || | ||| | ||| | ||| | ||| ||| || ||||| || ||||| | Sbjct 1313 CCTCCTCGCAATCTTAATACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGAC 1254 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| ||||| || || || ||||| ||||| ||||| | || Sbjct 1253 AGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGA 1194 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| ||||| ||||| ||||| || || || |||| || | ||| ||| Sbjct 1193 ATCCCCTCTTTGTCCTGAATTTTGGCTTTGACATTCTCGATAGTGTCAGATGGTTCAACT 1134 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||||||||| || || ||||| || |||||||| Sbjct 1133 TCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 1087 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || | ||| | ||| | ||||| ||| ||| || || || || ||||||| Sbjct 857 CCTCCTCGCAATCTCAATACTAAATGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAA 798 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| ||||||||||| || || || || || || |||||||| | || Sbjct 797 AGAGTGCGTCCATCTTCTAATTGCTTGCCGGCAAAAATAAGTCGCTGTTGGTCAGGAGGA 738 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| || |||||||| || || || || || || | || | || ||| Sbjct 737 ATCCCCTCTTTGTCTTGGATTTTAGCCTTTACATTCTCAATTGTGTCTGATGGCTCAACT 678 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||| || || |||||||| Sbjct 677 TCTAATGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 631 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || | ||| | ||| | ||||| || ||| || ||||| || ||||| | | Sbjct 173 CCTCCTCGCAATCTCAATACTAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAG 114 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||||||||| || || || ||||| |||||||| || | || Sbjct 113 AGGGTGCGGCCATCTTCTAATTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGGGGA 54 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC 288413 ||||| || || ||||| ||||| ||||| || ||||| || | ||| Sbjct 53 ATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTTTCAATTGTATC 7 >seq397 Length=962699 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| ||||| | || || ||||||||||| | || ||||||||||| Sbjct 58246 TTCTTTTTGAATATTGTAGTCTGAAAGTGTACGTCCGTCTTCGAGCTGCTTTCCTGCGAA 58305 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| || || || ||||||| || ||||| || || || || || || ||||| Sbjct 58306 GATCAGGCGTTGCTG---ATCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGCCTTCAC 58362 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | ||| || || || || || || || || || || || || || || Sbjct 58363 GTTTTCGATGGTATCAGACGGCTCCACCTCAAGGGTAATAGTTTTACCAGTGAGGGTTTT 58422 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 58423 TACGAAGATCTGCAT 58437 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 ||||| |||| || ||||||||| ||||| || || | || || |||||||||||| Sbjct 58457 ACGAGGTGAAGAGTAGATTCTTTTTGAATATTGTAATCCGAAAGAGTACGTCCGTCTTCT 58516 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 ||||| || || ||||| |||| ||||| ||| | ||| || ||||| || || || Sbjct 58517 AATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGTGGTATGCCTTCCTTGTCTTGA 58576 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 ||||| ||||| || ||||| || | |||| | || ||||| | ||||| || || Sbjct 58577 ATTTTTGCTTTTACATTTTCAATTGTATCGGATGGCTCAACTTCCAAGGTGATAGTTTTA 58636 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || | ||| || || || || |||||| || Sbjct 58637 CCAGTTAAAGTTTTCACAAAAATTTGCATTGTG 58669 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| || ||||| || ||||| | |||||| || || || Sbjct 56423 TCCTTTTGGATGTTGTAGTCGGACAGAGTGCGACCATCTTCCAGTTGTTTACCCGCAAAA 56482 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| || ||||| || ||||| || |||||||| || || ||||| Sbjct 56483 ATCAATCTCTGCTGG---TCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACA 56539 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| | ||| || || | || || || || |||||||| || || Sbjct 56540 TTTTCGATGGTGTCGGAAGGTTCCACCTCCAAGGTTATGGTTTTACCGGTCAGGGTTTTA 56599 Query 288460 ACGAATATCTGCAT 288473 || ||||||||||| Sbjct 56600 ACAAATATCTGCAT 56613 >seq504 Length=80497 Score = 118 bits (130), Expect = 3e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || || || || ||||| | |||||| || ||||| Sbjct 73080 TTCCTTCTGGATGTTGTAGTCCGACAGTGTACGGCCATCTTCCAGTTGTTTACCCGCGAA 73021 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||||||||| | || ||||| || || ||||| ||||| ||||| || || Sbjct 73020 GATAAGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATT 72961 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || | || ||||| || || || ||||| || || || |||||||| Sbjct 72960 CTCAATAGTGTCAGATGGCTCAACTTCCAGTGTAATAGTCTTGCCAGTGAGTGTCTTGAC 72901 Query 288462 GAATATCTGCATT 288474 || ||||||||| Sbjct 72900 AAAGATCTGCATT 72888 >seq87 Length=431742 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || ||||| || ||||| | || || || |||||| Sbjct 313599 TCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAG 313540 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || || || || ||||| |||||||| || || ||||| || Sbjct 313539 ATCAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTCACATTC 313480 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || ||||| ||||| ||||| || || || ||||| ||| Sbjct 313479 TCGATGGTGTCAGAGGCCTCCACCTCGAGGGTGATTGTCTTTCCCGTTAGGGTCTTCACG 313420 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 313419 AAGATTTGCATTTTG 313405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179201317969406