Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq852 226 3e-54 seq397 136 4e-27 seq27819 98.7 9e-16 seq504 86.0 6e-12 >seq852 Length=562639 Score = 226 bits (250), Expect = 3e-54 Identities = 448/653 (69%), Gaps = 15/653 (2%) Strand=Plus/Minus Query 22220 GTCGTCGCCGATACGGACGGTTCGCATTTGGCGCCTCTCGCGTACGACTATTTT-GAAAA 22278 ||||| || || ||||||||| || || | || || | ||| || || || || Sbjct 33868 GTCGTAGCTGACACGGACGGTAGCCACTTACCACCCCTGGATTAC-ACCATGGGAGAGAA 33810 Query 22279 CAACAAGCGTTTCAAG-ACGCATCCTAATAAAATTGTCGCCGGCTATTTTGTCGAGTGGG 22337 ||||||| |||||| | |||| | ||| | |||| | ||| || || || |||| Sbjct 33809 GAACAAGCCCTTCAAGCAAACATCTGGA-AAAGTAGTCGGTGCCTACTTCGTAGAATGGG 33751 Query 22338 GAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCGAACCTGTCGCATTTGC 22397 | ||||| | || |||| || | ||||| | || | || ||||| ||||| | Sbjct 33750 GTGTGTATCCCCGGAAGTTCCCTGTGGACAAAATTCCAATTCCAAACCTCACGCATCTTT 33691 Query 22398 TCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGACGCCCTGAAAACGGTGC 22457 | ||||| ||| | ||||| || || ||||| |||||||||||| |||| | Sbjct 33690 TATACGGGTTCATCCCAATTTGTGGGGGAGATGGCATCAACGACAGTTTGAAGGAAATCG 33631 Query 22458 CGGGAAGCTTCGAGGCGTTGCAACGGTCGTGCGTCAATAGAGCCGATTTCAAGGTGACCA 22517 || || ||| | || ||||||||||| ||| | | ||| || ||||||||| ||| Sbjct 33630 AAGGCAGTTTCCAAGCTTTGCAACGGTCTTGCAGCGGTCGAGAAGACTTCAAGGTGTCCA 33571 Query 22518 TACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTGTCGTCGTGGAACGAAC 22577 | |||||||| ||||| || | || ||||| ||||| || | || || ||||| |||| Sbjct 33570 TCCACGATCCATGGGCCGCTCTCCAGAAACCACAAAAGGGATTATCATCTTGGAATGAAC 33511 Query 22578 CGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCGAATCCTCATCTCAAAG 22637 | ||||| |||||||| |||||| ||||| || |||| ||| | ||| | | ||| Sbjct 33510 CTTACAAGGGCAACTTCGGTCAACTGATGTCATTGAAGCAAGCCAGACCTGACTTAAAAA 33451 Query 22638 TGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTT-TTATCATATGCACGACAA- 22695 | | | || || || || ||||| | | ||||| || || | | || | ||||| Sbjct 33450 TCCTGCCGTCTATTGGAGGTTGGACTCTTGCTGATCCTTTCTTCTTCTTTG-ATGACAAA 33392 Query 22696 --GAACGTGAGACAAATTTTCATCGATTCGGTGGAAGAGTATTTGATCACGTGGAAGTTC 22753 ||| ||| | |||| || |||| || | || | |||| |||||||| ||| Sbjct 33391 GTGAA---GAGGGACCGTTTCGTCAATTCAGTTAAGGAATTCCTGATGACGTGGAAATTC 33335 Query 22754 TTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGCGAATCCTAACGTG 22813 ||||| || |||||||| |||||||| || || ||||||||||| || || |||||| | Sbjct 33334 TTTGATGGTGTCGATATCGATTGGGAATTCCCTGGCGGCAAGGGCGCTAACCCTAACCTC 33275 Query 22814 GGCGATGCGGAACGCGACCGCGAAACGTACACGCTCCTCCTGAAAGAGCTCCG 22866 |||| | | | || ||||||| || |||| | ||||||| || || Sbjct 33274 GGCGGTCCTAA---GGATGGCGAAACCTATGTGCTCTTAATGAAAGAACTTCG 33225 >seq397 Length=962699 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| |||| ||| | || |||||||| || || || || ||| | Sbjct 57299 CCACCACGGAGACGCAATACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGAC 57358 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| ||||| ||||| |||||| |||| | |||||||||||| || || Sbjct 57359 AATGTGCGCCCATCTTCTAGTTGTTTACCAGCGAAGATAAGTCGCTGCTGATCTGGGGGA 57418 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| || |||||| || || ||| | | ||| | |||||| | | || ||| Sbjct 57419 ATGCCTTCTTTGTCCTGAATCTTGGCCTTCACATTTTCAATGGTGTCAGAAGGTTCCACT 57478 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||||| |||||||| ||||| ||||| ||||||||| Sbjct 57479 TCCAAGGTGATGGTTTTACCGGTCAGGGTTTTAACAAAGATCTGCATG 57526 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||||| ||| | || |||||||| || || || || ||| | Sbjct 57071 CCACCACGGAGACGCAACACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGAC 57130 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||||| || ||| |||| | ||||||||||| || || Sbjct 57131 AAAGTGCGACCATCTTCCAATTGTTTACCCGCGAAGATAAGACGCTGCTGATCTGGGGGA 57190 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | ||||| ||||| | | || || Sbjct 57191 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGTTCCACC 57250 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||||| || ||||| ||||| ||||| ||||||||| Sbjct 57251 TCTAAGGTTATGGTTTTACCAGTCAGGGTTTTAACAAAGATCTGCATG 57298 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || ||||| ||||| || | || | ||||| |||||||||||||||||||| Sbjct 58439 CCTCCACGTAAACGCAAGACGAGGTGAAGAGTAGATTCTTTTTGAATATTGTAATCCGAA 58498 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || |||| || || || ||| | ||||||||||||||||| || ||| Sbjct 58499 AGAGTACGTCCGTCTTCTAATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGTGGT 58558 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||| | ||| ||| ||| || | | ||| | || || | ||| || Sbjct 58559 ATGCCTTCCTTGT-CTTGAATTTTTGCTTTTACATTTTCAATTGTATCGGATGGCTCAAC 58617 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||||| || || | |||||| |||||||| ||||| Sbjct 58618 TTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 58665 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||||||||||||||| || | || || || || ||||| ||||| Sbjct 58241 GTAGATTCTTTTTGAATATTGTAGTCTGAAAGTGTACGTCCGTCTTCGAGCTGCTTTCCT 58300 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| || |||||||| || || || || |||||||| || || ||| Sbjct 58301 GCGAAGATCAGGCGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGCCTTC 58360 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| ||| || | ||| || || | ||| | ||||| || || || ||| Sbjct 58361 ACGTTTTCGATGGTATCAGACGGCTCCACCTCAAGGGTAATAGTTTTACCAGTGAGGGTT 58420 Query 127097 TTTACAAAAATCTGCAT 127113 ||||| || |||||||| Sbjct 58421 TTTACGAAGATCTGCAT 58437 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || || ||||| | ||||| ||||| || || ||||| || | Sbjct 57983 CCACCACGGAGACGTAATACTAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAC 58042 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | || || ||||| | |||| || || || || || || Sbjct 58043 AAAGTGCGCCCATCTTCCAATTGCTTACCAGCAAATATCAGTCTTTGTTGGTCTGGTGGA 58102 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| ||||| ||| ||| |||| | | ||| | |||||| | | ||| || Sbjct 58103 ATACCCTCTTTGTCT-TGAATTTTAGCTTTTACATTTTCTATGGTGTCAGAAGGCTCCAC 58161 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||||| ||||| |||||||| || ||||||||||| Sbjct 58162 CTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTAACGAAAATCTGCAT 58209 >seq27819 Length=1354 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || |||| ||| || ||||| | || || ||||| || ||||| |||||| Sbjct 401 CCTCCTCGCAATCTCAATACTAAATGCAAAGTGGATTCTTTCTGGATATTATAATCGGAG 342 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | ||| || |||||| |||| | |||||||| || || || Sbjct 341 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 282 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| || || | | ||| | || || | || || Sbjct 281 ATTCCCTCCTTGTCC-TGAATTTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCAAC 223 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || ||||| || ||||| ||||| |||||||| Sbjct 222 TTCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 175 >seq504 Length=80497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| |||||| ||||| | || || || || || || ||||| || || || || Sbjct 73106 AATCTCAACACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGTGTACGG 73047 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || || ||||| || ||| |||| | ||||| || || || || || |||||| Sbjct 73046 CCATCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGTTGGTCAGGGGGAATTCCCTCC 72987 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||||| ||| ||| || |||| | || | ||||| | ||| ||||| | || Sbjct 72986 TTGTCC-TGAATTTTGGCTTTGACATTCTCAATAGTGTCAGATGGCTCAACTTCCAGTGT 72928 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || ||||| || || || || ||||| |||||||| Sbjct 72927 AATAGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 72889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475322623906480