Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq87 165 2e-35 seq397 150 4e-31 seq504 125 2e-23 seq27819 114 3e-20 >seq87 Length=431742 Score = 165 bits (182), Expect = 2e-35 Identities = 173/227 (76%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||||||||||||||| || | ||||||||||| | ||| Sbjct 313629 CGAAGACGTAGCACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTG 313570 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| ||||||||||| |||||||||||||| ||| ||| || Sbjct 313569 CGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCC 313510 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| |||||| |||| |||||| | | || || || | Sbjct 313509 TCTTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCCACCTCGAGG 313450 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| ||||| || || ||||| || ||||| |||||| Sbjct 313449 GTGATTGTCTTTCCCGTTAGGGTCTTCACGAAGATTTG---CATTTT 313406 >seq397 Length=962699 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || || ||||| || |||| ||| ||||| | |||||| Sbjct 56621 CGGAGACGCAGCACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAAAGTG 56680 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| || || || |||||||| |||||||||||||| || ||| ||| Sbjct 56681 CGACCATCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGCTGGTCTGGGGGAATGCCT 56740 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| |||||| ||| | |||||| | | ||| || ||||| Sbjct 56741 TCTTTGTCCTGAATCTTGGCCTTCACATTTTCAATGGTGTCAGAAGGTTCCACCTCCAAG 56800 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || ||||| ||||| || || Sbjct 56801 GTGATGGTTTTACCAGTCAGGGTTTTAACAAAGATCTG 56838 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || || ||||| || |||| ||| ||||||| |||||| Sbjct 57533 CGGAGACGCAGCACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCAGACAAAGTG 57592 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| || || || |||||||| |||||||||||||| || ||| ||| Sbjct 57593 CGACCATCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGCTGGTCTGGGGGAATGCCT 57652 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| ||||| |||||| | | || || ||||| Sbjct 57653 TCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCAGAAGGCTCCACCTCCAAG 57712 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || ||||| ||||| || || Sbjct 57713 GTGATGGTTTTACCGGTCAGGGTTTTAACAAAGATCTG 57750 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| ||||||||||||| ||||||||| | || ||| Sbjct 56393 CGAAGACGCAAAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTG 56452 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| || || || || || || | | ||||||||| ||| ||| ||| Sbjct 56453 CGACCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGCTGGTCTGGAGGAATGCCT 56512 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| ||||| |||||| | | ||| || ||||| Sbjct 56513 TCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACCTCCAAG 56572 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || ||||| ||||| || || Sbjct 56573 GTTATGGTTTTACCGGTCAGGGTTTTAACAAATATCTG 56610 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || || || ||||| || |||| ||| ||||| | ||| || | |||||||| Sbjct 57317 ACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAATGTGCGCCCATCTTCT 57376 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 || || || || |||||||| || |||||||| || || ||| |||||| |||||| Sbjct 57377 AGTTGTTTACCAGCGAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGA 57436 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| |||||| ||| | |||||| | | ||| || ||||| ||||| || ||| Sbjct 57437 ATCTTGGCCTTCACATTTTCAATGGTGTCAGAAGGTTCCACTTCCAAGGTGATGGTTTTA 57496 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || || Sbjct 57497 CCGGTCAGGGTTTTAACAAAGATCTG 57522 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || || || ||||| || |||| ||| ||||| | |||||| | ||||||||| Sbjct 57089 ACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAAAGTGCGACCATCTTCC 57148 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | || || || |||||||| ||||||||||| || || ||| || || ||||| Sbjct 57149 AATTGTTTACCCGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 57208 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| |||||| ||||| ||||| | | ||| || || || || || || ||| Sbjct 57209 ATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGTTCCACCTCTAAGGTTATGGTTTTA 57268 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || || Sbjct 57269 CCAGTCAGGGTTTTAACAAAGATCTG 57294 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| || || || || ||||| | |||||||| | | || Sbjct 58217 CGAAGACGTAGAACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCTGAAAGTGTA 58276 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||| ||||||||||| |||||||| || || ||||| || || ||| ||| Sbjct 58277 CGTCCGTCTTCGAGCTGCTTTCCTGCGAAGATCAGGCGTTGCTGATCTGGGGGAATACCT 58336 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||||| ||||| ||| || | | || || || | Sbjct 58337 TCCTTGTCTTGAATCTTAGCCTTCACGTTTTCGATGGTATCAGACGGCTCCACCTCAAGG 58396 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| ||||| || || || || Sbjct 58397 GTAATAGTTTTACCAGTGAGGGTTTTTACGAAGATCTG 58434 Score = 104 bits (114), Expect = 6e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| ||||| ||||| || || ||||| | ||||| || | | ||| | ||| || Sbjct 58453 CAAGACGAGGTGAAGAGTAGATTCTTTTTGAATATTGTAATCCGAAAGAGTACGTCCGTC 58512 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| | ||||| || ||||| || | |||||||| || || || ||||| || Sbjct 58513 TTCTAATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGTGGTATGCCTTCCTTGTC 58572 Query 199537 CTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 ||||| |||||||| || ||| | || || | || || || ||||| ||||| | Sbjct 58573 TTGAAT-TTTTGCTTTTACATTTTCAATTGTATCGGATGGCTCAACTTCCAAGGTGATAG 58631 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || | |||||||||||||||||| Sbjct 58632 TTTTACCAGTTAAAGTTTTCACAAAAATTTG 58662 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || || |||| ||||||||| | |||||| | |||||||||| ||| Sbjct 58007 TGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGCCCATCTTCCAATTGC 58066 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || || || || | || ||||| || ||| || ||| || ||||| ||| Sbjct 58067 TTACCAGCAAATATCAGTCTTTGTTGGTCTGGTGGAATACCCTCTTTGTCTTGAAT-TTT 58125 Query 199547 TGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||| || ||| | |||||| | | || || || | || || || ||||| || Sbjct 58126 AGCTTTTACATTTTCTATGGTGTCAGAAGGCTCCACCTCGAGAGTAATGGTTTTACCGGT 58185 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||||||||| || ||||| || Sbjct 58186 GAGAGTTTTAACGAAAATCTG 58206 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || || || ||||||||||| | |||||| |||| || ||| ||||| Sbjct 57171 CTTATCTTCGCGGGTAAACAATTGGAAGATGGTCGCACTTTGTCCGACTATAACATCCAG 57112 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||| || ||||| || || ||| | || || Sbjct 57111 AAAGAGTCCACCCTTCATCTGGTGTTGCGTCTCCG 57077 >seq504 Length=80497 Score = 125 bits (138), Expect = 2e-23 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || ||||| |||| |||||||| | | ||| | |||||||||||| || Sbjct 72635 TGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGTCCATCTTCCAGTTGT 72576 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| |||||||||||||| || ||||||||| |||||||| ||| Sbjct 72575 TTACCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAAT-TTT 72517 Query 199547 TGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || || |||| ||||| | || || || |||| || || ||||| || || Sbjct 72516 GGCTTTGACATTCTCGATAGTGTCGGATGGCTCAACTTCCAGTGTAATAGTCTTGCCAGT 72457 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| || || Sbjct 72456 GAGGGTCTTGACAAAGATCTG 72436 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | || ||||| || ||||| |||| ||||||||| | || || | || Sbjct 73104 TCTCAACACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGTGTACGGCC 73045 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||||| || || || |||||||| |||||||| ||||| || |||||| || Sbjct 73044 ATCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGTTGGTCAGGGGGAATTCCCTCCTT 72985 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 |||||||| ||| || || || || | ||||| | || || || |||| || | Sbjct 72984 GTCCTGAAT-TTTGGCTTTGACATTCTCAATAGTGTCAGATGGCTCAACTTCCAGTGTAA 72926 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || ||||| || || ||||| || || Sbjct 72925 TAGTCTTGCCAGTGAGTGTCTTGACAAAGATCTG 72892 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489 ||||| || ||||| || | ||||||||||| | || | |||||||||| ||||| Sbjct 73544 AGAGTTGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAATTGCTTG 73485 Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || || || || | || || ||||| || ||| || || || || ||||| | Sbjct 73484 CCAGCAAATATTAACCGTTGTTGGTCAGGGGGAATCCCCTCCTTGTCTTGGATCTTGGCC 73425 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| |||| ||||| | || || || ||||| ||||| ||||| || ||||| Sbjct 73424 TTCACATTCTCGATAGTGTCAGATGGCTCAACCTCCAATGTGATGGTCTTTCCGGTGAGG 73365 Query 199610 GTTTTCACAAAAATTTG 199626 || |||||||| || || Sbjct 73364 GTCTTCACAAAGATCTG 73348 >seq27819 Length=1354 Score = 114 bits (126), Expect = 3e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| | ||||| || | || | ||| || || || |||| || || || | | || Sbjct 396 TCGCAATCTCAATACTAAATGCAAAGTGGATTCTTTCTGGATATTATAATCGGAGAGGGT 337 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| |||||| || ||||||||||||||||||||||| || |||||| Sbjct 336 GCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATTCC 277 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 || |||||||| ||| || || || ||| | || || | || ||| || |||| Sbjct 276 CTCCTTGTCCTGAAT-TTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCAACTTCCA 218 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| ||||| || ||||| ||||| ||||| || || Sbjct 217 AAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTG 178 Score = 104 bits (114), Expect = 6e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| |||||| || ||||||||||||||||||||||| || |||||| || Sbjct 1016 CCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATTCCCTCC 957 Query 199532 CGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 |||||||| ||| || || || ||| | || || | || ||| || ||||| || Sbjct 956 TTGTCCTGAAT-TTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCAACTTCCAAAGT 898 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || ||||| || || || || || || Sbjct 897 GATGGTCTTCCCGGTGAGGGTCTTAACGAAGATCTG 862 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| | ||||| || | || ||||| || ||||| |||| ||||||||| | | || Sbjct 168 TCGCAATCTCAATACTAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAGAGGGT 109 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| | ||||| ||||| ||||| |||||||||||||| || |||||| Sbjct 108 GCGGCCATCTTCTAATTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGGGGAATTCC 49 Query 199528 TTCTCGCTCCTGAATCTTTTGCTT 199551 || |||||||| ||| |||| Sbjct 48 CTCCTTGTCCTGAAT-TTTGGCTT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178468799423459