Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq852 273 2e-68 seq27819 107 1e-18 seq397 107 1e-18 seq504 95.1 8e-15 >seq852 Length=562639 Score = 273 bits (302), Expect = 2e-68 Identities = 801/1210 (66%), Gaps = 48/1210 (4%) Strand=Plus/Plus Query 5830 TGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCACGCAAATAAACCAC 5889 ||||||| |||||||| | ||| ||||| |||||||| || |||||||| || | ||||| Sbjct 32593 TGTTCATAGCATTTAATAAATCTCCGTTATCCGCGTCGATCTCCCACGCGAAAAGACCAC 32652 Query 5890 CCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGATCGTTGTCGTACG 5949 | | || || | ||||| |||||||| | | || ||| | | |||||||||| Sbjct 32653 CGAGCTTATTATTTCTGACATATTTACCTTTCTCAATAACAGATCGTGCATTGTCGTACG 32712 Query 5950 TAACTAAATCATTATTATCGTAG--------ACGTACGGAGATTGTGCAATGTTATCATA 6001 ||| || |||| | ||| || || ||||| | ||| || | | ||||||| Sbjct 32713 TAATTAGATCACC--TGTCGAAGGCCTAAACACATACGGCGCTTGAGCGACGCTATCATA 32770 Query 6002 ---GAATTGTACACTTTCGT--CGTACCT--ATTTACAATATCTTTATAATCGATTACGC 6054 ||| | || |||| || | | ||| |||| ||| | ||||| | || | Sbjct 32771 ATGGAACTCC-CATTTTCCCTGCGCAATTTCATTCGCAATCTCTCTGTAATCCACCACAC 32829 Query 6055 CGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGGATTATTGTTTT 6114 || || |||||||||||| || ||| | ||| | ||||| || ||| | | ||||| Sbjct 32830 CGTCTTGCCATGTACCTTTGACAGGACCAGAAGCATTGCCTGTGAAGGGAATGTCGTTTT 32889 Query 6115 CG-ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTACTACTAATTTA 6173 || || || || ||||| |||| || ||||| |||||||| ||||| ||||| | || Sbjct 32890 CGTACCCG-TGAACACCAGTCCATCCACGTCCGTACATAGCAACACCAACTACGACCTTC 32948 Query 6174 GTCGAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGTTGTGTAATTTTCG 6233 ||| || ||| |||| |||||| |||| | | |||| || ||||| |||| Sbjct 32949 TTCGGATTGACTCCTTGAGCTAACAAGTATTTAACACCGAAATCAGTCGTGTATGTTTCC 33008 Query 6234 TTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTTTCCATGGACCAA 6293 ||| | ||| | |||||||| || | ||| || ||| | | || | ||||| Sbjct 33009 TTAGGATTCCAGGCTGGAGCGTACAGAGATGTCTGGTGACCTAGGGTGTCGTTCGACCAC 33068 Query 6294 GCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAG--CGTTGCGCGTCTG 6351 || || || || |||||| |||| | || || | || | ||| | |||||| ||| Sbjct 33069 GCTCCCTTGAAGTCGTAGTTCATGAAGAAGATGTGGTCCATGTAGTTCTGTGCGCGACTG 33128 Query 6352 TATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTTAGTTGCAATC 6411 || ||||| || | || ||||| |||| |||| |||||| |||||| | | Sbjct 33129 --TAGTCGACCACTTGAATCTTGTCCCAACCAGCACTGATAGCTGAAGTTAGCTCGTACT 33186 Query 6412 GTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTTTAA--AAGTAT 6469 || || | | || | ||||||||| || || || | |||| | ||| | Sbjct 33187 TCTTGCCAGTAGCAGATGATAACTCGTTGAGCATCTCACG-AAGTTCTTTCATTAAG-AG 33244 Query 6470 TGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACCTTTACCGCC 6529 ||| |||| || |||| | | | ||| || ||||| || || || ||||| Sbjct 33245 CACATAGGTTTCGCCATCCTTAGGACC---GCCGAGGTTAGGGTTAGCGCCCTTGCCGCC 33301 Query 6530 CGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAAAAATTCGCG 6589 || || |||||||| || ||||| || || || ||||||||||| || ||||| Sbjct 33302 AGGGAATTCCCAATCGATATCGACACCATCAAAGAATTTCCACGTCATCAGGAATTCCTT 33361 Query 6590 CACACTATCAAC-AAACGTATTTCGTTTTTCGAC---GTCGTTTAACTGGTAAAACGGAT 6645 || || || ||||| || | ||| || ||| | || | | || |||| Sbjct 33362 AACTGAATTGACGAAACG---GTCCCTCTTC-ACTTTGTCATCAAAGAAGAAGAAAGGAT 33417 Query 6646 CGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGGC--GCTT 6703 | ||| ||||| || || || || |||| ||| |||| || || | |||| |||| Sbjct 33418 CAGCAAGAGTCCAACCTCCAATAGACGGCAGGATTTTTAAGTCAGG--TCTGGCTTGCTT 33475 Query 6704 GATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGACACCTTT 6763 | | ||| | || || ||||| || ||||| ||||| || | | | || || Sbjct 33476 CAATGACATCAGTTGACCGAAGTTGCCCTTGTAAGGTTCATTCCAAGATGATAATCCCTT 33535 Query 6764 TTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTTTTCGGCC 6823 ||||||||| || || || ||||| ||| || |||| || ||||| |||| ||| || Sbjct 33536 TTGTGGTTTCTGGAGAGCGGCCCATGGATCGTGGATGGACACCTTGAAGTCTTCTCGACC 33595 Query 6824 GGCGCACGATTTTTGCAACGCCT-CAAACGAACTGGGTATTTGTTGTTTAAGCGCATCGT 6882 | ||| || |||||| || | |||| || | ||| | || || | |||| Sbjct 33596 GCTGCAAGACCGTTGCAAAGCTTGGAAACTGCCTTCG-ATT--TCCTTCAAAC-TGTCGT 33651 Query 6883 TTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGATTAGGAA 6942 | | ||||| || ||||||||||| || |||||||| || | ||| || || || |||| Sbjct 33652 TGATGCCATCTCCCCCACAAATTGGGATGAACCCGTATAAAAGATGCGTGAGGTTTGGAA 33711 Query 6943 TGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAGTAAGCGC 7002 | ||||||||||| | || | | | || ||||||||||| || ||||| || | Sbjct 33712 TTGGAATTTTGTCCACAGGGAACTTCCGGGGATACACACCCCATTCTACGAAGTAGGCAC 33771 Query 7003 CCACAACATT 7012 | || || || Sbjct 33772 CGACTACTTT 33781 >seq27819 Length=1354 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||||||| | || ||| |||||||||||| |||||| || ||||||||||||| Sbjct 401 CCTCCTCGCAATCTCAATACTAAATGCAAAGTGGATTCTTTCTGGATATTATAATCGGAG 342 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||| || || || | || || | ||||||||| || | ||| Sbjct 341 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 282 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| ||||| ||||| | | | ||| || | ||| || Sbjct 281 ATTCCCTCCTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCAACT 222 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || | ||||| || ||||||||||| Sbjct 221 TCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 175 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||| ||||| |||||||| ||| |||||| || ||||||||||||| Sbjct 1085 CCACCTCTTAGACGAAGTACTAAATGCAAGGTGGATTCTTTCTGGATATTATAATCGGAG 1026 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||| || || || | || || | ||||||||| || | ||| Sbjct 1025 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 966 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| ||||| ||||| | | | ||| || | ||| || Sbjct 965 ATTCCCTCCTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCAACT 906 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || | || || |||||||||||||| Sbjct 905 TCCAAAGTGATGGTCTTCCCGGTGAGGGTCTTAACGAAGATCTGCAT 859 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||||||| | | ||| ||||||| |||| ||| || || || || || || | | Sbjct 1313 CCTCCTCGCAATCTTAATACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGAC 1254 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| |||||||| || ||| |||| || | ||| || || || | ||| Sbjct 1253 AGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGA 1194 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| ||||| ||| | || | | ||||| | ||| || Sbjct 1193 ATCCCCTCTTTGTCCTGAATTTTGGCTTTGACATTCTCGATAGTGTCAGATGGTTCAACT 1134 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || | ||||| || ||||||||||| Sbjct 1133 TCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 1087 >seq397 Length=962699 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | |||||| |||| ||| | ||| ||||| || || ||||| |||| Sbjct 56614 GCCACCACGGAGACGCAGCACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGA 56673 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| |||| |||||| || | || || | ||||||||| || | ||| Sbjct 56674 CAAAGTGCGACCATCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGCTGGTCTGGGGG 56733 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || || | | | | ||||| | |||||| Sbjct 56734 AATGCCTTCTTTGTCCTGAATCTTGGCCTTCACATTTTCAATGGTGTCAGAAGGTTCCAC 56793 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || |||||||| || | ||||| || |||||||||||| Sbjct 56794 CTCCAAGGTGATGGTTTTACCAGTCAGGGTTTTAACAAAGATCTGCATG 56842 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| |||| ||| | ||| ||||| || || ||||| |||| Sbjct 57070 GCCACCACGGAGACGCAACACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGA 57129 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| ||||||||||| || | || || | |||||||||||| | ||| Sbjct 57130 CAAAGTGCGACCATCTTCCAATTGTTTACCCGCGAAGATAAGACGCTGCTGATCTGGGGG 57189 Query 39612 TACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||| || ||||| | || || | || ||| || ||||| | |||| Sbjct 57190 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATA--GTGTCGGAAGGTTCC 57247 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || || |||||||| || | ||||| || |||||||||||| Sbjct 57248 ACCTCTAAGGTTATGGTTTTACCAGTCAGGGTTTTAACAAAGATCTGCATG 57298 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || ||||||| || | || | ||| ||||||||| ||||| |||| Sbjct 58435 CATC-CCTCCACGTAAACGCAAGACGAGGTGAAGAGTAGATTCTTTTTGAATATTGTAAT 58493 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | | | | ||| | || || ||||| || || | ||||| || ||||||||||| | Sbjct 58494 CCGAAAGAGTACGTCCGTCTTCTAATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAG 58553 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 |||| |||||| ||||| |||||| ||| | | | | ||| || | | Sbjct 58554 GTGGTATGCCTTCCTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGGATGGCT 58613 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||| || || |||||||| ||||||||||| || || || ||||| Sbjct 58614 CAACTTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 58665 >seq504 Length=80497 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| ||||| ||||| | |||| ||| || || ||||| || |||| Sbjct 72659 CCTCCTCTCAGACGAAGTACTAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 72600 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| |||| |||||| ||| | || || | ||||||||| || | ||| Sbjct 72599 AGAGTGCGTCCATCTTCCAGTTGTTTACCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 72540 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| ||||| ||| | || | | ||||| | || || Sbjct 72539 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATAGTGTCGGATGGCTCAACT 72480 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| || || || || | || || || ||||||||||| Sbjct 72479 TCCAGTGTAATAGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 72433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347242690362041