Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq28624 145 9e-30 >seq28624 Length=432676 Score = 145 bits (160), Expect = 9e-30 Identities = 668/1042 (64%), Gaps = 32/1042 (3%) Strand=Plus/Plus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| | ||||| || | || || || ||||| |||||||||||| | | | | | Sbjct 57936 ACATGCTTATGCGAGTTTCTATTGGAATTCATGGAGAAGATATTGATGCAGCAATTAATA 57995 Query 111679 CATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTTCAACGCT 111737 ||||| || | || | || |||| ||||| | || || || || ||| Sbjct 57996 CATACAACTTATTATCA-GAAAAATACTTCACACACGCCAGTCCTACACTTTTTTCTGCT 58054 Query 111738 GGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATC 111797 | ||| ||| |||| ||| | ||| ||||||| | ||||| | || || ||| || Sbjct 58055 GCTACTCCACGACCACAACTATCCTCTTGTTTCTTGATTGCTATGAAAGATGATAGTATT 58114 Query 111798 AATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATC 111857 | || || || | ||| | | ||||||| || || |||| ||||| || || Sbjct 58115 GAAGGTATCTATGACACATTGAAGCAATGTGCATTGATTTCTAAGTCTGCTGGAGGCATA 58174 Query 111858 GGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTACAAATGGTCA 111916 || | || ||||| | ||||| || | || || ||| || ||||||||| Sbjct 58175 GGACTTCATGTCCATTGCATAAGAGCTAA-AGGTACTTACATTGCTGGAACAAATGGTGT 58233 Query 111917 ATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCA 111976 || ||||| || |||| ||| | || || | || |||||| | ||||| | || Sbjct 58234 TTCTAATGGTCTTGTTCCCATGTTGCGGGTGTACAATAACACAGCAAGATATGTTGATCA 58293 Query 111977 AGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATAT 112033 | ||| | || ||| || | || |||| || || || |||||||| ||| | Sbjct 58294 GGGTGGCAATAAACGTCCTGGAGCTTTTGCCATCTACCTAGAACCCTGGCACGCTGATGT 58353 Query 112034 CATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC-GCGATC 112092 | || || | || || ||| ||| | || || | || |||| | || | Sbjct 58354 ATTCGAATTTTTGGATTTAAAAAAGAACACTGGTAAGGAAGAAGTACG-TGCCAGAGAAC 58412 Query 112093 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 112152 | || | ||||||||||| ||||| || |||||||| |||||||| ||| || |||| Sbjct 58413 TGTTTTATGCTCTCTGGATCCCAGACCTGTTCATGAAAAGAGTTGAAAAGAATGAGAATT 58472 Query 112153 GGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTT 112211 || ||| | |||||| | | |||||||| | || || | ||| || || ||| Sbjct 58473 GGAGCCTCATGTGTCCACATGACTGTCCCGGTCTTGCAGACTGTTGGGGG-GAAGAATTT 58531 Query 112212 GAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG----GGCGACTGCGACGGTGCCAGC 112267 || || || ||| || || ||||||| | | | | || | || || Sbjct 58532 GAGAAGCTTTATGAAAAATATGAAGAAGAAAAGAGATTTGTCAA--GCAA--GTTAGGGC 58587 Query 112268 TGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCT 112327 | | |||||||||||||| | | | ||| || ||||| ||||||| |||||| Sbjct 58588 TCAAATTTTGTGGAAAGCTATTGTTGAAGCACAAGTGGAAACTGGCACACCATTTATGCT 58647 Query 112328 TTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTC 112387 |||||||||| | || ||| |||||| || ||| | ||||| || || || | Sbjct 58648 TTACAAAGACTCTTGCAACAGAAAGAGCAACCAACAAAATTTAGGCACTATTAAATGCAG 58707 Query 112388 CAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCT 112447 ||| |||||||| ||||| | |||| || || ||||| || ||||| || | Sbjct 58708 CAATCTCTGTACGGAAATTGTAGAATACACTGATTCTGATGAAGTAGCAGTGTGCAATTT 58767 Query 112448 CGCATCAATCGCTCTCCCCAAGTATGT--GGATCCAGAGACAAAGACATTTGATTATGAA 112505 ||||| || ||| | || ||||| | | | ||||||| | | | | | |||| Sbjct 58768 AGCATCTATTGCTTT----AAATATGTTCGTAAACGAAGACAAA-TCTTATAACTTTGAA 58822 Query 112506 AAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAAT 112565 ||| | | ||||| || || | ||||| |||| | || | | | ||||| ||| Sbjct 58823 AAATTGAAAGAAGTCACCAAGATCATCACACAAAATTTGAATAAAATCATTGAAGTTAAT 58882 Query 112566 TTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 112622 | |||||| || ||| || || || ||||||||||| | || |||||| | Sbjct 58883 TATTACCCTGTCCCTGA---AGCAAAAAATTCCAATATGAGACATAGACCTATTGGTATT 58939 Query 112623 GGTGTCCAAGGTCTCGCGGATG 112644 ||||| ||||| | || |||| Sbjct 58940 GGTGTTCAAGGATTAGCTGATG 58961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620509800063440