Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq28624 102 1e-16 seq6 96.9 4e-15 >seq28624 Length=432676 Score = 102 bits (112), Expect = 1e-16 Identities = 365/566 (64%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 110578 GGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATC 110637 ||||| | |||| |||||| || || ||||| || |||||||||||||| || ||| Sbjct 58488 GGACACATGAGGCTCCAATTCTCATTCTTTTCAACTCTTTTCATGAACAGGTCTGGGATC 58429 Query 110638 CACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGC 110697 || | || | || || || | | ||| | ||||| | ||| ||| || Sbjct 58428 CAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCAGTGTTCTTTTTTAAA 58369 Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTA 110757 |||||||| || | | ||| | |||||| ||||| || |||| || | | ||| | Sbjct 58368 TCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCAAAAGCTCCAGGA 58309 Query 110758 CG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 || | || |||| | |||||| | ||||||| |||| | |||| | ||| ||| Sbjct 58308 CGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTACACCCGCAACATGGGA 58249 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTC 110873 | || |||| || ||||||||| || ||| | | || | || || | ||| Sbjct 58248 ACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCT-TTAGCTCTTATGCA 58190 Query 110874 GTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGT 110933 |||| ||| | || || || || || ||||| ||| |||||| | | | ||| Sbjct 58189 ATGGACATGAAGTCCTATGCCTCCAGCAGACTTAGAAATCAATGCACATTGCTTCAATGT 58130 Query 110934 ACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTG 110993 |||| ||||| ||||| ||| | || | ||||| | || ||||| || | || Sbjct 58129 GTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAAACAAGAGGATAGTTG 58070 Query 110994 AGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGA 111053 || || || || | ||| || |||||||| | || || |||| || || Sbjct 58069 TGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGTGAAGTATTTTTCTGA 58010 Query 111054 CATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAAC 111113 | ||||||||| | | ||| | | ||||| || ||||| ||||| | ||| Sbjct 58009 TAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATGAATTCCAATAGAAAC 57950 Query 111114 TCGCATGAACATATATTGAGG-CGTT 111138 |||||| | ||| | ||| || |||| Sbjct 57949 TCGCATAAGCATGTGTTGGGGACGTT 57924 >seq6 Length=1691400 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/182 (72%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTT 119576 ||||||||||| || | ||||| ||||| | |||||||||||| || | |||||| Sbjct 1115153 TCATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCTTC 1115212 Query 119577 AGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCG 119636 |||||||| || | |||||| ||||| || ||||||||||| ||| || || ||| Sbjct 1115213 AGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAAATGCG 1115272 Query 119637 AATAGACGCTCAGCAAAAGGTCGAGACT---TGTCGAACCACTTGAGAGCCCAGTTGGCC 119693 | | ||||| | || | | ||||| || | | ||||| || ||||||| ||| Sbjct 1115273 ACAATGCGCTCGCCGAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGTCTGCC 1115332 Query 119694 TT 119695 || Sbjct 1115333 TT 1115334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588755303330600