Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq28624 147 3e-30 seq6 91.5 2e-13 >seq28624 Length=432676 Score = 147 bits (162), Expect = 3e-30 Identities = 668/1051 (64%), Gaps = 20/1051 (2%) Strand=Plus/Minus Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329 || ||| |||| || | ||||||||||| | |||||||||||| |||| |||||| || Sbjct 58969 AACAAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATGTCTCATATTGGA 58910 Query 106330 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 ||| || ||| || || ||| |||| ||||||| | || | ||||| Sbjct 58909 ATTTTTTGC---TTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATTCAAATTTTG 58853 Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446 || | ||||| |||| ||| | | ||||||| | | | ||| | ||||| || Sbjct 58852 TGTGATGATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAG---ATTTGTCTTCGTT 58796 Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 || || | | || || ||||| |||||||| || || ||||| ||| || Sbjct 58795 TACGAACATATTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCAGAATCAGT 58736 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 ||| |||| |||||| ||||| | ||| | ||||| || || ||||| | |||||| Sbjct 58735 GTATTCTACAATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTTTGTTGGTT 58676 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 |||||| ||||||| | || ||||| ||||| | || || || || ||| |||| Sbjct 58675 GCTCTTTCTGTTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCCACTTGTGC 58616 Query 106627 CTTGAGAATTGCCTTCCAC-ACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCC---T 106682 | | ||| || |||||| | || | | | || | | || ||| | || | | Sbjct 58615 TTCAACAATAGCTTTCCACAAAATTTGAGCC--CTA-ACTTGC-TTGACAAATCTCTTTT 58560 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 106742 | | || || ||| || || ||||| || || ||| ||| | ||||| | Sbjct 58559 CTTCTTCATATTTTTCATAAAGCTTCTCAAATTCTTCCCCCCAACAGTCTGCAAGACCGG 58500 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | | | |||||| | || ||| | || || ||||| | |||||||| | Sbjct 58499 GACAGTCATGTGGACACATGAGGCTCCAATTCTCATTCTTTTCAACTCTTTTCATGAACA 58440 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 106862 ||||||| ||||| || | |||| || ||||| || | ||||| | ||| || Sbjct 58439 GGTCTGGGATCCAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCAGTGT 58380 Query 106863 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 | | ||| || | || || | | ||| |||||||| || || || |||| || | Sbjct 58379 TCTTTTTTAAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCAA 58320 Query 106923 TAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 106979 || ||| || | ||| | |||| ||||| | |||||| || | || | Sbjct 58319 AAGCTCCAGGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTACACCC 58260 Query 106980 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG 107039 | | ||| |||| || ||||| || ||||||||| || ||| || || | Sbjct 58259 GCAACATGGGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCTTTAG 58200 Query 107040 CTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACT 107099 |||| | ||||| || | || || || ||||| |||| || || ||||| | Sbjct 58199 CTCTTATGCAATGGACATGAAGTCCTATGCCTCCAGCAGACTTAGAAATCAATGCACATT 58140 Query 107100 CCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAAC 107159 | | | || |||||||||| | || || || || | || || | ||| ||| Sbjct 58139 GCTTCAATGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAAACAAG 58080 Query 107160 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 107219 ||| | || |||| ||| ||| ||||| || || || || | ||||| |||| Sbjct 58079 AGGATAGTTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGTGAAGT 58020 Query 107220 TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGC 107279 || || | || |||||| | | | | |||||| ||||| || || || | Sbjct 58019 ATTTTTCTGATAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATGAATTC 57960 Query 107280 CGATGGCCACACGCATAAACATGTATTGGGG 107310 | || | || ||||||| ||||| |||||| Sbjct 57959 CAATAGAAACTCGCATAAGCATGTGTTGGGG 57929 >seq6 Length=1691400 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| || ||||| | |||||| ||| | || ||||||||||| || |||| Sbjct 1115151 CCTCATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCT 1115210 Query 117353 TCAACCAATAAATAG-CGCAGAA-TGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 ||| |||| | || | |||| || || || ||||| ||||| ||||| ||| ||||| Sbjct 1115211 TCAGCCAAAATATTGACGCAAAACTG--CCAGAGAAAAAGATGCCCTCTACAGCAGCAAA 1115268 Query 117411 CGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTT 117470 || | || ||||||| |||| | |||||| || | | ||| | || ||||| | Sbjct 1115269 TGCGACAATGCGCTCGCCGAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGTC 1115328 Query 117471 CGCCTTCTTCT 117481 |||||||||| Sbjct 1115329 TGCCTTCTTCT 1115339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589759726819480