Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq28624 470 2e-127 >seq28624 Length=432676 Score = 470 bits (520), Expect = 2e-127 Identities = 1172/1782 (66%), Gaps = 30/1782 (2%) Strand=Plus/Minus Query 46973 tttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || ||||| || | ||| | || || | ||| || || ||||||||||| || Sbjct 59692 TTTATCTACAGTGAATTGAATGGCGTTTGCGGCGGGTTTCGTCCGCAAATAATACATTCC 59633 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| || ||||| | |||| | | |||||| || || |||||| ||| | || Sbjct 59632 AGTTTTCAAACCCATCTTCCAAGCGTGGAAATGAATTGATGTCAATTTACCGTAATTTGG 59573 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 || | || ||||| |||| ||||| || ||||| ||||| |||||||| || || || Sbjct 59572 CTCAGCAACGTGAATGTTAAACGATTGGCTTTGATCGATAAAAGCACCTCTGTCTGCAGC 59513 Query 47153 CATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 ||| || || | |||| || |||||||||||||||||| || | | | || Sbjct 59512 CAT--CTGAATTGTAGTTTTGACTGATATCTCCCATACTGTTTTGTATAGCTCCCTGATA 59455 Query 47211 TCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 |||| || | | | | |||||||||| || || || | || || || || Sbjct 59454 TCTTTCGGTATACTTTCAATATTTTGAATGGAGCCATTATTGTGAATTATAAGATTCTTC 59395 Query 47268 aattcatttgaccaaagttttcgttcagt-taatgtttttaa-AAGATGAGGATTAACAA 47325 | || | ||| || | || | || | | | | || |||||| |||| || | Sbjct 59394 ATATCGTCATCCCACAGCT--CGGCCTGTGTCAAATCTCGAAGAAGATGGTGATTTACGA 59337 Query 47326 TTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAG 47385 || ||||| ||||||| ||||| || ||||||||| || | || || | | Sbjct 59336 CCTGGAATTCGCCAGATAAAACTCTGCGCTGATATATATTTGAAGTGAACGGCTCAAAGG 59277 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 | ||||| || |||| |||||| ||||| || ||||||||||| | || | ||| | Sbjct 59276 ACTCATTGTTACCAAGAATTTGTGCAGTAGAAGCTGTAGGCATTGGAGCTAGTAACAGCG 59217 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 |||||||| || | |||| ||| | | |||| | ||| || || | Sbjct 59216 AATTTCTTAAACCGTGTTTTGCTATTTTTTCTTTGAGAGTTGTCCAGTTCCATAGGTCCG 59157 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 ||| | ||| | ||||||||| | ||| || |||||| || ||| | || Sbjct 59156 TTGGCGTTTTCTCCCACATATCATATTGCAAAATACCCTTACTTGCAGGGCTACCTTCAT 59097 Query 47566 ATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAAT 47625 ||| | || || || ||| || ||| | |||||| |||||||| ||||| | ||||| Sbjct 59096 ATGAACTGTATGGGCCATATTTTTCAGCTAATTCACAGCTTGCTTCTAATGCTCCATAAT 59037 Query 47626 ATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANN 47685 | || || ||||| |||| | ||| || || | |||| | |||| | || Sbjct 59036 AAATAGTCTCAAAAATTTGTTGGTTAAGTTTGATAGCTTTTTCACTTTCATACGGTATTC 58977 Query 47686 NNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTT 47745 || | ||| || ||||||||||||||||||||||| |||||||| | Sbjct 58976 TCATTATAACAAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATGTCTCA 58917 Query 47746 TATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGAN 47805 |||| ||| | ||||| || | || || | || | || || |||||||| | | Sbjct 58916 TATTGGAATTTTTTGCTTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATTCAAAT 58857 Query 47806 NNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAA---ATCAAACTTGTTATTTA 47862 | |||| | ||||| | ||| || | | |||| | Sbjct 58856 TTTGTGTGATGATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAGATTTGTCTTCGT 58797 Query 47863 TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG 47922 | || ||| |||| | || |||||||||| ||| || || ||||| |||| | || || Sbjct 58796 TTACGAACATATTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCAGAATCAG 58737 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 | |||| || ||||| | ||| ||||| | ||||| ||||| || |||||||| || | Sbjct 58736 TGTATTCTACAATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTTTGTTGGT 58677 Query 47983 TATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 | | |||| || | ||| |||||||||||||| ||||| |||||||| | || | Sbjct 58676 TGCTCTTTCTGTTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCCACTTGTG 58617 Query 48043 ATTCAATGATAGATTTCCAAA------CAGTCCTAGCCTTTATAACAGCTCTAGCTTTAT 48096 ||||| |||| |||||| | || |||| | | | ||| ||| |||| Sbjct 58616 CTTCAACAATAGCTTTCCACAAAATTTGAGCCCTAACTTGCTTGACAAATCT--CTTT-- 58561 Query 48097 TATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAAC 48155 || | ||| ||||| ||| | |||||||||||| ||||| | ||| | | | | Sbjct 58560 --TCTTCTTCATATTTTTCATAAAGCTTCTCAAATTCTTCCCCCCA-ACAGTCTGCAAGA 58504 Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 || ||||| |||| |||||||| | ||||| ||||| |||| ||||| |||| Sbjct 58503 CCGGGACAGTCATGTGGACACATGAGGCTCCAATTCTCATTCTTTTCAACTCTTTTCATG 58444 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||||| ||||| ||||| ||| | || || | | || |||||| || ||| Sbjct 58443 AACAGGTCTGGGATCCAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCA 58384 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 | ||| |||| | || | ||| || | || |||||| ||||| ||||||| || || Sbjct 58383 GTGTTCTTTTTTAAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATG 58324 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | | || || |||||||| || || ||||| | |||||| || || || || || Sbjct 58323 GCAAAAGCTCCAGGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTAC 58264 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || | ||||| || |||| |||||| || | |||||| ||||| | ||| ||| | || Sbjct 58263 ACCCGCAACATGGGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCT 58204 Query 48456 CTAGCTCTTATATTA-CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 |||||||||| | | |||| | ||||| || || || ||||| || | || Sbjct 58203 TTAGCTCTTATGCAATGGACATGAAGT-CCTATGCCTCCAGCAGACTTAGAAATCAATGC 58145 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 ||| | || | || ||||| || ||||| |||||||||||| ||||| | | || Sbjct 58144 ACATTGCTTCAATGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAA 58085 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 |||| || | ||| || | ||| | | | ||| | ||| ||| || || | Sbjct 58084 ACAAGAGGATAGTTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGT 58025 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATG 48694 || |||| |||||||| || || ||||| | ||| | | ||| ||||| | ||| Sbjct 58024 GAAGTATTTTTCTGATAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATG 57965 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 || || ||||| || ||||| | ||| | ||| || | ||| Sbjct 57964 AATTCCAATAGAAACTCGCATAAGCATGTGTTGGGGACGTTC 57923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561898170806280