Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq154 125 5e-24 seq397 122 7e-23 seq87 100 2e-16 seq504 87.8 1e-12 seq27819 82.4 6e-11 seq18 82.4 6e-11 >seq154 Length=1330714 Score = 125 bits (138), Expect = 5e-24 Identities = 176/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 7828 CGTCTGCTCACGTTCAAGGACTGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGCC 7887 ||||||| || |||| |||||||| | || || || || || || | || Sbjct 117213 CGTCTGCGAACCTTCAGCGACTGGCCTCGTTGCATGGGCCAAAAGCCCGAGGAGTTGGCG 117272 Query 7888 GAAGCTGGATTATACTACACGGGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGGG 7947 ||||| ||||| | ||||| || | || |||| || || ||||||||||| ||||| Sbjct 117273 GAAGCCGGATTCTTTTACACCGGGCAAGGGGATAAAACTAAATGTTTCTACTGCGACGGA 117332 Query 7948 GGTCTCAAAGATTGGGAGGAAAACGATATACCGTGGGAGCAACACGCGCGCTGGTTTGAT 8007 ||||| ||||| |||||| | |||| | |||||||| || |||||||| ||||||||| Sbjct 117333 GGTCTGAAAGACTGGGAGAACGACGACGTCCCGTGGGAACAGCACGCGCGGTGGTTTGAT 117392 Query 8008 AAATGCGCATATGTCAAACTAGTCAAAGGGGAGGAATATGTTCAGAAGGTAATTACTGAA 8067 |||||| || || | || || ||||| || || |||||||| || || | || Sbjct 117393 CGATGCGCTTACGTTCAGCTGGTGAAAGGCCGAGACTACGTTCAGAAAGTTATCTCGGAG 117452 Query 8068 GCGTGCG 8074 || |||| Sbjct 117453 GCTTGCG 117459 Score = 116 bits (128), Expect = 3e-21 Identities = 136/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 7552 ACTTTCAAGAATTGGCCCGTGCCGTTTCTTGATCCCCAAACTA-TGGCCCGCAACGGGTT 7610 || ||| |||| |||||||| | ||||||| ||| ||| | | || | || || || Sbjct 116886 ACATTCGAGAAATGGCCCGTATC-TTTCTTGTCACCCCAACAACTTGCAAGAAATGGTTT 116944 Query 7611 TTATTATTTGGGTCGAAGAGACGAGGTGCGTTGCGCGTTTTGTAAAGTGGAAATCATGCG 7670 ||||||| | || | | ||||| ||| | ||||| || || ||||| ||||| ||||| Sbjct 116945 TTATTATCTCGGATGCGGTGACGAAGTGAGATGCGCTTTCTGCAAAGTCGAAATTATGCG 117004 Query 7671 GTGGGTCGAAGGTGACGATCCGGAGAAGGACCATCGGAAGTGGGCACCGCAGTGTCCGTT 7730 |||||||||||||||||||||| | || || | || |||||||| |||||||| || Sbjct 117005 CTGGGTCGAAGGTGACGATCCGGCTAGAGATCACCAGAGATGGGCACCCCAGTGTCCATT 117064 Query 7731 T 7731 | Sbjct 117065 T 117065 >seq397 Length=962699 Score = 122 bits (134), Expect = 7e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||||||||| || ||| | || |||| || || ||||| || || || Sbjct 58475 TCTTTTTGAATATTGTAATCCGAAAGAGTACGTCCGTCTTCTAATTGCTTGCCCGCGAAA 58534 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| |||||| ||||| | || | ||| |||||||| ||| ||| ||||||| Sbjct 58535 ATCAATCGCTGCTGATCAGGTGGTATGCCTTCCTTGTCTTGAATTTTTGCTTTTACATTT 58594 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| || |||| || || ||||| || || |||||||| ||| Sbjct 58595 TCAATTGTATCGGATGGCTCAACTTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACA 58654 Query 48756 AAAATCTGCATCGTG 48770 ||||| ||||| ||| Sbjct 58655 AAAATTTGCATTGTG 58669 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||| ||| || ||| |||||| || || || || || || | | | ||| Sbjct 57080 AGACGCAACACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAAAGTGCGA 57139 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || ||||| || || || || ||||| ||||| | ||||| ||||||| Sbjct 57140 CCATCTTCCAATTGTTTACCCGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCCTCC 57199 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || | |||||||| | || Sbjct 57200 TTGTCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGTTCCACCTCTAAGGTT 57259 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||||| ||||| |||||||| Sbjct 57260 ATGGTTTTACCAGTCAGGGTTTTAACAAAGATCTGCAT 57297 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || ||||| || || ||||| || || ||||| || || | | | || Sbjct 57992 AGACGTAATACTAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGC 58051 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| |||||||| ||||||||||||| ||||| || | |||| ||||| Sbjct 58052 CCATCTTCCAATTGCTTACCAGCAAATATCAGTCTTTGTTGGTCTGGTGGAATACCCTCT 58111 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||||||| | | | || || | ||||||||| | ||| Sbjct 58112 TTGTCTTGAATTTTAGCTTTTACATTTTCTATGGTGTCAGAAGGCTCCACCTCGAGAGTA 58171 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || || | |||||| || |||||||||||| Sbjct 58172 ATGGTTTTACCGGTGAGAGTTTTAACGAAAATCTGCATC 58210 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || ||| |||||| || || || || ||||| | | | ||| Sbjct 57536 AGACGCAGCACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCAGACAAAGTGCGA 57595 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| || ||||| || || || || ||||| || || | ||||| ||| ||| Sbjct 57596 CCATCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCC 57655 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 57656 TTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTG 57715 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||||| ||||| |||||||| Sbjct 57716 ATGGTTTTACCGGTCAGGGTTTTAACAAAGATCTGCAT 57753 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||||||||| || || || | || |||| || | |||||| || || || Sbjct 58247 TCTTTTTGAATATTGTAGTCTGAAAGTGTACGTCCGTCTTCGAGCTGCTTTCCTGCGAAG 58306 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| || || ||||| | ||||| || |||||||| |||||| || || Sbjct 58307 ATCAGGCGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGCCTTCACGTTT 58366 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || |||| ||||||||| | ||||| ||||| || || | |||||||| Sbjct 58367 TCGATGGTATCAGACGGCTCCACCTCAAGGGTAATAGTTTTACCAGTGAGGGTTTTTACG 58426 Query 48756 AAAATCTGCATC 48767 || ||||||||| Sbjct 58427 AAGATCTGCATC 58438 >seq87 Length=431742 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| ||||| ||||| ||| | ||| Sbjct 313626 AGACGTAGCACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGA 313567 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| || || | |||| |||||| Sbjct 313566 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCCTCT 313507 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || ||||||||||| | || Sbjct 313506 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCCACCTCGAGGGTG 313447 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||| | || || || || || ||||| Sbjct 313446 ATTGTCTTTCCCGTTAGGGTCTTCACGAAGATTTGCAT 313409 >seq504 Length=80497 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| ||||| || ||| || || || || ||||| || || || | || | || Sbjct 73101 CAACACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGTGTACGGCCATC 73042 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| || ||||| || || || || |||||||| || | ||||| ||||||||||| Sbjct 73041 TTCCAGTTGTTTACCCGCGAAGATAAGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTC 72982 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||| || ||| ||| | | || || || | ||| || |||| ||||| || Sbjct 72981 CTGAATTTTGGCTTTGACATTCTCAATAGTGTCAGATGGCTCAACTTCCAGTGTAATAGT 72922 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | || || ||||| |||||||| Sbjct 72921 CTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 72889 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| ||||| ||||| || | || | || ||||| ||||| || |||||| Sbjct 73535 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAT 73476 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | || ||||| || | ||||| ||||||||||| ||||| || ||| Sbjct 73475 ATTAACCGTTGTTGGTCAGGGGGAATCCCCTCCTTGTCTTGGATCTTGGCCTTCACATTC 73416 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | ||| ||||||| || || || ||||| || | || || ||| Sbjct 73415 TCGATAGTGTCAGATGGCTCAACCTCCAATGTGATGGTCTTTCCGGTGAGGGTCTTCACA 73356 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 73355 AAGATCTGCAT 73345 >seq27819 Length=1354 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| || ||||| | ||| ||||| || ||||| ||||| || || | || | || Sbjct 387 CAATACTAAATGCAAAGTGGATTCTTTCTGGATATTATAATCGGAGAGGGTGCGGCCATC 328 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||||||||| || || || || || ||||| || || | ||||| ||||||||||| Sbjct 327 TTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTGTC 268 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||| || ||| ||| | | | || || | || || |||| || || || Sbjct 267 CTGAATTTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCAACTTCCAAAGTGATGGT 208 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | ||||| ||||| |||||||| Sbjct 207 CTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 175 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| || ||||| || ||| || || ||||| ||||| || || ||| | || | || Sbjct 843 CAATACTAAATGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGTCCATC 784 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || ||||| |||||||| || ||||||||||| || | |||| ||||| ||||| Sbjct 783 TTCTAATTGCTTGCCGGCAAAAATAAGTCGCTGTTGGTCAGGAGGAATCCCCTCTTTGTC 724 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 || || |||||| | | | ||||| | ||| || || | || || || Sbjct 723 TTGGATTTTAGCCTTTACATTCTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATGGT 664 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | || || ||||| |||||||| Sbjct 663 CTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 631 >seq18 Length=639756 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 ||||| || ||| ||| || || | ||||||||| || || || || || || |||| Sbjct 268524 GGATAGAATATTCTTTCGCATATGAGTTGAGCAATTCTATCACCTTTTTTAACTGCAAAT 268583 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 ||| || || |||||||| || || ||||| || || || | ||||||||||| || Sbjct 268584 TCTTGATCTGAGTGATTGAAAAGTACAACTCCTACATTCCCTCGATAATCCTCATCAATA 268643 Query 9187 ACACCAGC 9194 |||||||| Sbjct 268644 ACACCAGC 268651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380798426471571