Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 105 1e-17 seq28624 84.2 4e-11 >seq6 Length=1691400 Score = 105 bits (116), Expect = 1e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||| ||||| || |||||||| || || || ||||| |||||||| || || ||| Sbjct 1115784 TACATTTCAGAATGGACATTCTCCATGGCAATTTGGAAACCGTAGAAACATCTCGCTTCA 1115843 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 || |||||||| ||||| | ||| | ||||||||||| || || || ||||| Sbjct 1115844 GTTACTTGCACTTCCTGAGAGAAGCGCTCAACTAGATTCTCATTTACAATGCCGTCTGAT 1115903 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTC 48585 |||||||||||||| | ||||| || | ||| || | ||| Sbjct 1115904 GCAGCAAAGAAGGCCAATACATGCTTGATGAAGTGCCTCTC 1115944 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| || | | || ||||| || |||| ||| ||| ||||||||| ||| Sbjct 1115189 CCAGGCATGAGACCACGTTTCTTCAGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAG 1115248 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 |||||||| || || || || ||| | | ||| ||||| | || |||| | Sbjct 1115249 ATGCCCTCTACAGCAGCAAATGCGACAATGCGCTCGCCGAATGTTGCAGACTTGCTGGCT 1115308 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| || |||||||||||||||||||| | ||| |||| || || | ||| | Sbjct 1115309 ATCCACTGCAGGGCCCAGTCTGCCTTCTTCTTCACGCACGGCAGGGTTTCAACGGCATTG 1115368 Query 48371 AAGAG 48375 ||||| Sbjct 1115369 AAGAG 1115373 >seq28624 Length=432676 Score = 84.2 bits (92), Expect = 4e-11 Identities = 143/204 (70%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 213780 GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACC 213839 ||||||||||||||||| | | | | | | ||||| | |||||||||||| |||| | Sbjct 58488 GGACACATGAGGCTCCAATTCTCATTCTTTTCAACTCTTTTCATGAACAGGTCTGGGATC 58429 Query 213840 CACAGCGCGGTGAACAGGTCCCTGGTCC-TCCTCTCGTCCACTCCAGAGTTTTTGCGCAG 213898 || || || ||||| || |||| | | || || ||| |||| ||| || | Sbjct 58428 CAGAGAGCATAAAACAGTTCTCTGGCACGTACT-TCTTCCTTACCAGTGTTCTTTTTTAA 58370 Query 213899 ATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958 ||| | ||| || || | || |||||||| || || | |||||||||||| || || || Sbjct 58369 ATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCAAAAGCTCCAGG 58310 Query 213959 CC---TCTTGCCGCCCTGGTCCAC 213979 | | ||||| ||||| || || Sbjct 58309 ACGTTTATTGCCACCCTGATCAAC 58286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931183743015680