Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq28624 114 2e-20 seq6 95.1 2e-14 >seq28624 Length=432676 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 |||||||| || ||||| | || || | || || || | |||||| ||||| |||||| Sbjct 58488 GGACACATGAGGCTCCAATTCTCATTCTTTTCAACTCTTTTCATGAACAGGTCTGGGATC 58429 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 || || || | ||| || ||||||| || || ||| || |||| || | | | Sbjct 58428 CAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCAGTGTTCTTTTTTAAA 58369 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 |||||||| || || | ||||||||||| || || || |||| ||| | ||| || || Sbjct 58368 TCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCAAAAGCTCCAGGA 58309 Query 222179 CGCTTGTTGCCACCCTGATCCAC 222201 || || |||||||||||||| || Sbjct 58308 CGTTTATTGCCACCCTGATCAAC 58286 >seq6 Length=1691400 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/175 (73%), Gaps = 5/175 (3%) Strand=Plus/Minus Query 25570 AAAGAC---GAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGT 25626 |||||| ||| ||| || ||||| | || ||||| |||||||| || || || || Sbjct 1115953 AAAGACTGTGAGAGGCACTTCATCAAGCATGTATTGGCCTTCTTTGCTGCATCAGACGGC 1115894 Query 25627 ATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAA 25685 || || || |||||||| ||| | ||| | ||||||||| ||| || || | | Sbjct 1115893 ATTGTAAATGAGAATCTAGTTGAGCGCTTCTCTCAGGAAGTGCAAGTAACTGAAG-CGAG 1115835 Query 25686 GTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCC 25740 ||||||||||||||||| || ||||| || ||||| || ||||| ||||| || Sbjct 1115834 ATGTTTCTACGGTTTCCAAATTGCCATGGAGAATGTCCATTCTGAAATGTATTCC 1115780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928496750242880