Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq28624 165 1e-35 seq6 91.5 2e-13 >seq28624 Length=432676 Score = 165 bits (182), Expect = 1e-35 Identities = 668/1044 (64%), Gaps = 20/1044 (2%) Strand=Plus/Plus Query 75219 ACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGA 75278 ||||| | ||||| || | || || || || || ||||| |||||| | | | | | Sbjct 57936 ACATGCTTATGCGAGTTTCTATTGGAATTCATGGAGAAGATATTGATGCAGCAATTAATA 57995 Query 75279 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 75338 ||||| || | || || |||| ||||| | || || || || ||||| Sbjct 57996 CATACAACTTATTATCAGAAAAATACTTCACACACGCCAGTCCTACACTTTTTTCTGCTG 58055 Query 75339 GTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCA 75398 ||| ||| |||| || | ||| ||| ||| | || || | || || || || Sbjct 58056 CTACTCCACGACCACAACTATCCTCTTGTTTCTTGATTGCTATGAAAGATGATAGTATTG 58115 Query 75399 ACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTG 75458 | |||||||||| || | | | | ||||| || || |||| ||||| || || | Sbjct 58116 AAGGTATCTATGACACATTGAAGCAATGTGCATTGATTTCTAAGTCTGCTGGAGGCATAG 58175 Query 75459 GGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAAT 75518 | | || ||||| | ||||| || || ||| || ||||||||| | Sbjct 58176 GACTTCATGTCCATTGCATAAGAGCTAAAGGTACTTACATTGCTGGAACAAATGGTGTTT 58235 Query 75519 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAG 75578 | ||||| || |||| ||| | || || | || |||||| | ||||| |||| | Sbjct 58236 CTAATGGTCTTGTTCCCATGTTGCGGGTGTACAATAACACAGCAAGATATGTTGATCAGG 58295 Query 75579 CGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCA 75635 || | || || | | || ||||| | ||||| ||||| || ||| | Sbjct 58296 GTGGCAATAAACGTCCTGGAGCTTTTGCCATCTACCTAGAACCCTGGCACGCTGATGTAT 58355 Query 75636 TGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCT 75695 | || || | || ||| | ||| ||| | ||||| | || ||||| || | Sbjct 58356 TCGAATTTTTGGATTTAAAAAAGAACACTGGTAAGGAAGAAGTACGTGCCAGAGAACTGT 58415 Query 75696 TTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGT 75755 ||| | || ||||| |||||||| |||||||| | ||||| || || | ||| Sbjct 58416 TTTATGCTCTCTGGATCCCAGACCTGTTCATGAAAAGAGTTGAAAAGAATGAGAATTGGA 58475 Query 75756 CTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAG 75815 || | |||||| | | || ||||| | ||| ||| || || ||||| Sbjct 58476 GCCTCATGTGTCCACATGACTGTCCCGGTCTTGCAGACTGTTGGGGGGAAGAATTTGAGA 58535 Query 75816 CCCTCTACACAAAGTATGAAGAGGAGGGTAGA---GCCAATGCGACTGTACCAGCCGCCG 75872 || || ||| |||||||| || ||| | ||| || | | || | | | Sbjct 58536 AGCTTTATGAAAAATATGAAGAAGAAAAGAGATTTGTCAA-GCAAGT-TAG--GGCTCAA 58591 Query 75873 ATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTAC 75931 || || ||||| |||||| | || |||| ||| ||||| ||||||| |||||||||| Sbjct 58592 ATTTTGTGGAAAGCTATTGTTGAAGCACAAGTGGAAACTGGCACACCATTTATGCTTTAC 58651 Query 75932 AAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAAT 75991 || || |||| |||| ||||| |||||| | ||||| || || || || || ||| Sbjct 58652 AAAGACTCTTGCAACAGAAAGAGCAACCAACAAAATTTAGGCACTATTAAATGCAGCAAT 58711 Query 75992 CTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCA 76051 || || ||||||||| |||| ||||| ||| ||||| || || |||||||| ||| Sbjct 58712 CTCTGTACGGAAATTGTAGAATACACTGATTCTGATGAAGTAGCAGTGTGCAATTTAGCA 58771 Query 76052 TCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTT 76111 || || || | | || || || ||||| | ||| | | | ||||||| | Sbjct 58772 TCTATTGCTTTAAATATGTTCGTAAACGAAGACA---AATCTTATAACTTTGAAAAATTG 58828 Query 76112 CATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTAT 76171 | ||| |||| ||||| | || ||||| | || | ||||||| |||| ||| Sbjct 58829 AAAGAAGTCACCAAGATCATCACACAAAATTTGAATAAAATCATTGAAGTTAATTATTAC 58888 Query 76172 CCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTT 76228 || || ||| || ||| || |||||| |||| |||||||||||| | |||||| Sbjct 58889 CCTGTCCCTGA---AGCAAAAAATTCCAATATGAGACATAGACCTATTGGTATTGGTGTT 58945 Query 76229 CAAGGTCTCGCGGATGTATTTATT 76252 ||||| | || |||| ||| || Sbjct 58946 CAAGGATTAGCTGATGCTTTTGTT 58969 >seq6 Length=1691400 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGC 65080 |||||||||| | ||||| || | ||| | | || |||||| | |||| ||||| Sbjct 1115339 AGAAGAAGGCAGACTGGGCCCTGCAGTGGATAGCCAGCAAGTCTGCAACATTCGGCGAGC 1115280 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA-TTCTGCG-CTAT 65138 || || | || ||||| ||| ||||| ||||| ||||| || || || |||| | || Sbjct 1115279 GCATTGTCGCATTTGCTGCTGTAGAGGGCATCTTTTTCTCTGG--CAGTTTTGCGTCAAT 1115222 Query 65139 TTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTC 65198 | |||| ||||||| || ||||||||||| || | ||| |||||| | ||||| Sbjct 1115221 ATTTTGGCTGAAGAAACGTGGTCTCATGCCTGGATTGACTTTCAGCAATGAATTGATTTC 1115162 Query 65199 CCGAGATGAGG 65209 || ||||||| Sbjct 1115161 TCGGGATGAGG 1115151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596346057913760