Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq397 147 4e-30 seq27819 127 4e-24 seq504 125 1e-23 >seq397 Length=962699 Score = 147 bits (162), Expect = 4e-30 Identities = 126/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||||||| || || || ||||| |||| ||| |||||||| ||||| ||||| || Sbjct 58511 TCTTCTAATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGTGGTATGCCTTCCTTG 58570 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||||| |||| ||| |||||||| | ||||||||| | || ||| Sbjct 58571 TCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGGATGGCTCAACTTCCAAGGTGATA 58630 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||||| |||| ||||| ||||| ||||||||| Sbjct 58631 GTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATT 58666 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | || | ||| || || |||||||| || || || | | | Sbjct 57767 CGCAGCACTAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGACAAAGTGCGACCA 57826 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || ||||| || || ||||| |||||||| ||||| ||||| || |||||||| Sbjct 57827 TCTTCCAACTGTTTACCTGCGAAAATCAATCTCTGCTGATCTGGAGGAATGCCTTCTTTG 57886 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | ||| ||||||||| || ||||||||||||| ||||| Sbjct 57887 TCCTGGATCTTGGCCTTCACATTCTCAATAGTATCCGATGACTCAACTTCTAAGGTTATT 57946 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || |||| || |||||||| || ||||| Sbjct 57947 GTTTTGCCAGTTAAAGTCTTTACAAAGATCTGCAT 57981 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||||||| | || | |||||| || ||||||||||| || || | ||| || Sbjct 57316 TACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAATGTGCGCCCATCTTC 57375 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 || |||||| || || || || | || ||| ||||| || || || |||||||| || || Sbjct 57376 TAGTTGTTTACCAGCGAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTG 57435 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 || |||| || | |||| ||| || || |||| || ||||| | || || ||||| Sbjct 57436 AATCTTGGCCTTCACATTTTCAATGGTGTCAGAAGGTTCCACTTCCAAGGTGATGGTTTT 57495 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || ||||| ||||| || ||||| Sbjct 57496 ACCGGTCAGGGTTTTAACAAAGATCTGCAT 57525 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||| | || | |||||| || ||||||||||| || || | | ||| || Sbjct 57089 ACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAAAGTGCGACCATCTTCC 57148 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 |||||||| || || || || | | ||| ||||| || || || || || || || || Sbjct 57149 AATTGTTTACCCGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 57208 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| || | |||| ||||| ||||||| || || |||| ||||| |||||| Sbjct 57209 ATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGTTCCACCTCTAAGGTTATGGTTTTA 57268 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || ||||| Sbjct 57269 CCAGTCAGGGTTTTAACAAAGATCTGCAT 57297 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||| | || | |||||| || ||||||||||| || || | | | Sbjct 56627 CGCAGCACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAAAGTGCGACCA 56686 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || || || || | | ||| || || || || || |||||||| Sbjct 56687 TCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCTTTG 56746 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | |||| ||| || || |||| || || || | || || Sbjct 56747 TCCTGAATCTTGGCCTTCACATTTTCAATGGTGTCAGAAGGTTCCACCTCCAAGGTGATG 56806 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| ||||| || ||||| Sbjct 56807 GTTTTACCAGTCAGGGTTTTAACAAAGATCTGCAT 56841 >seq27819 Length=1354 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||| ||||| | ||| | ||| | || | || || ||| || |||||| Sbjct 860 ATACCTCCTCGCAATCTCAATACTAAATGAAGAGTGGATTCCTTCTGAATGTTGTAGTCG 801 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| |||||||| || ||||||||||| | || |||||| |||||| Sbjct 800 GAAAGAGTGCGTCCATCTTCTAATTGCTTGCCGGCAAAAATAAGTCGCTGTTGGTCAGGA 741 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| ||||| | |||| ||| ||| || || || | |||| Sbjct 740 GGAATCCCCTCTTTGTCTTGGATTTTAGCCTTTACATTCTCAATTGTGTCTGATGGCTCA 681 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| || || || || || || || || || ||||| || ||||| Sbjct 680 ACTTCTAATGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 631 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | |||||||| | ||| | ||| | || || || || |||||| Sbjct 632 ATACCACCTCTTAGACGAAGTACTAAATGAAGTGTTGATTCCTTCTGGATGTTGTAGTCG 573 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || ||||| || || ||||| || | | |||||| ||||| Sbjct 572 GAGAGGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGG 513 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || ||||| | ||| | |||| ||| || || || | |||| Sbjct 512 GGAATTCCTTCCTTGTCCTGAATTTTAGCTTTCACATTTTCAATTGTGTCCGATGGCTCA 453 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| || ||||| || || || || || || || || || ||||| Sbjct 452 ACTTCTAATGTAATAGTCTTGCCAGTAAGGGTCTTAACGAAGATCTGCAT 403 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | |||||||| | |||||| || | ||||| |||||||| ||| Sbjct 1088 ATACCACCTCTTAGACGAAGTACTAAATGCAAGGTGGATTCTTTCTGGATATTATAATCG 1029 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || || || || || || || || | | ||| || ||||| Sbjct 1028 GAGAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGG 969 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || || ||||||| ||| | |||| ||| ||||| || | ||| Sbjct 968 GGAATTCCCTCCTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCA 909 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || || || || || || || || || || || ||||| Sbjct 908 ACTTCCAAAGTGATGGTCTTCCCGGTGAGGGTCTTAACGAAGATCTGCAT 859 >seq504 Length=80497 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| || | || ||||||| ||||| || | || || || || |||||||| Sbjct 74350 CCACCCCTAAGTCTGAGTACCAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAG 74291 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| || | || || ||||||||||| | || |||||| |||||||| Sbjct 74290 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAAATAAGTCGCTGTTGGTCAGGAGGA 74231 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || ||||| ||||| ||||| | ||| | ||| ||| ||||| |||| ||||||| Sbjct 74230 ATCCCCTCTTTGTCTTGGATTTTAGCTTTCACATTCTCAATTGTATCCGAAGGCTCAACT 74171 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || || || || || || ||||| || ||||| Sbjct 74170 TCCAGTGTAATAGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 74124 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | |||||||| | ||| | || | || || || || |||||| Sbjct 73346 ATACCACCTCTTAGACGAAGTACTAAATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCG 73287 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | | ||||| |||||| Sbjct 73286 GAGAGAGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCAGGA 73227 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||||| ||| | ||| ||| ||||| || | |||| Sbjct 73226 GGAATGCCTTCTTTGTCTTGAATTTTGGCTTTAACATTCTCAATTGTATCCGATGGCTCA 73167 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || ||||| || || || || || || ||||| || |||||| Sbjct 73166 ACTTCCAGTGTAATAGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATT 73116 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||||| | || | ||||| || | ||||| ||| || ||||| Sbjct 72890 ATTCCTCCTCTCAATCTCAACACTAAATGCAGAGTGGATTCTTTCTGAATGTTGTAGTCT 72831 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || ||||| || |||||||| || | | ||||| |||||| Sbjct 72830 GACAGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGA 72771 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| || || ||||| | ||| | |||| ||| ||||| || | |||| Sbjct 72770 GGAATCCCCTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATTGTATCCGATGGCTCA 72711 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| || ||||| || || || || || || ||||| || ||||| Sbjct 72710 ACTTCTAATGTAATAGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 72661 Score = 109 bits (120), Expect = 1e-18 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||| | |||||||| | ||||| || | ||| || ||| ||||||||| Sbjct 72434 ATACCTCCTCTAAGACGAAGTACTAAGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCG 72375 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || ||||| || || || || ||||| | ||||| ||||| Sbjct 72374 GAGAGAGTGCGGCCATCTTCCAATTGCTTGCCAGCGAATATTAACCGTTGTTGGTCAGGG 72315 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || |||| || | ||| ||||| || || | |||| Sbjct 72314 GGAATCCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATAGTGTCAGATGGCTCA 72255 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TTTATT 193366 || || | || || || || || || || || || ||||| || ||||| |||||| Sbjct 72254 ACCTCCAATGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATGTTTATT 72198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899317288250640