Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2067 125 2e-23 seq28624 104 7e-17 seq155 84.2 6e-11 >seq2067 Length=417557 Score = 125 bits (138), Expect = 2e-23 Identities = 306/457 (67%), Gaps = 10/457 (2%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 ||||| |||||||||| || ||||| ||||||| | ||| |||||||||||| Sbjct 348453 ATATCTACTCTGTTTGTAGCAGCCAAGACAACAACATTAGTGGTGGTGTTAAATCCATCC 348394 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTT-TCATCATTTGAACCTCTTGAATC 289007 || | ||| | || ||||| || |||| ||| | | | | | |||| | Sbjct 348393 ATTTCTACTAACAACTGGTTAAGGGT--GTTCTCTTGTTCTGAATGG--CCTCCAAAGCT 348338 Query 289008 ACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGG 289067 || | | | ||||||| |||||||||||||||||| ||||| || | | || || Sbjct 348337 ACGCCCACC---CCTTTTTCGACCAACAGCATCAATTTCATCAATAAACAAAATGCATGG 348281 Query 289068 AGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATA 289127 | || || | || || | || | ||||| || | ||||| ||| | ||||||| | Sbjct 348280 TGCATGTTTACGGGCCATAGAGAACATGTCTCTCACTCTGGATGGTCCCACACCAACAAA 348221 Query 289128 CATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTAC 289187 ||| |||| ||| || || | ||||| || |||| |||||| || || || || Sbjct 348220 CATCTCTAAAAACTCTGAGCCTGATACCGTTATAAATGGTACATTAGCCTCACCAGCGGT 348161 Query 289188 TGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT-AATAGAACTCCCTTTG 289246 ||| | ||||| | || ||||| || ||||| || |||| | |||| | ||||||| Sbjct 348160 AGCCTTAGCCAGTAAGGTTTTACCAGTACCAGG-GGGCCCTGTCAATAATGCACCCTTTG 348102 Query 289247 GTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCT 289306 | | ||||||||| | | || | || || | ||||| || | |||| |||| Sbjct 348101 GAATTTTTGCCCCCAAATCAATGTACTGCTGGGGATTTTTTAAGAAGTTAACAAATTCCA 348042 Query 289307 CAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | ||| ||| || || |||||||| || ||||| Sbjct 348041 TGATCTCAATTTTGGCTTCCTCACATCCGGCCACATC 348005 >seq28624 Length=432676 Score = 104 bits (114), Expect = 7e-17 Identities = 718/1138 (63%), Gaps = 29/1138 (3%) Strand=Plus/Minus Query 155323 CAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTAAATG 155382 || ||||||| |||||||| || | || || | | | |||| | ||| | | | | Sbjct 59042 CATAATAAATAGTCTCAAAAATTTGTTGGTTAAGTTTGATAGCTTTTTCACTTTCATACG 58983 Query 155383 CGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGAT 155442 || ||| | | ||| | || ||||| || ||||| |||||||| | || | || Sbjct 58982 GTATTCTCATTATAACAAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTAT 58923 Query 155443 GCCTGTAATTGCTCCTGCTTGTCTTCTTGTTT-GGGTAAAAATTCACATCAATAATGTTA 155501 | || |||| | ||| |||| | |||||| |||| || ||||| || ||| Sbjct 58922 GTCTCATATTGGAATTTTTTG-CTTCAGGGACAGGGTAATAATTAACTTCAATGATTTTA 58864 Query 155502 TTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTA 155561 || |||||| | | |||||| || ||| ||||| || ||| | | | ||| Sbjct 58863 TTCAAATTTTGTGTGATGATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAGATTTG 58804 Query 155562 TCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTG 155621 || || ||||| |||||| | | ||||||| || | ||| || || || || | Sbjct 58803 TCTTCGTTTACGAACATATTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCA 58744 Query 155622 TCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTC 155681 || ||||||||||||| || || || || | || || ||||||||||| Sbjct 58743 GAATCAGTGTATTCTACAATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTT 58684 Query 155682 TTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCC 155741 | ||||| || ||||| |||| || ||||| || || |||| || || || ||| Sbjct 58683 TGTTGGTTGCTCTTTCTGTTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCC 58624 Query 155742 ATCTGTGCGTCCAGAAT--CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATC 155799 | ||||| || | ||| |||| ||| | | || ||| ||||||| ||| Sbjct 58623 ACTTGTGCTTCAACAATAGCTTT--CCACAAAATTTGAGCCCTAACTTGCTTGACAAATC 58566 Query 155800 TGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAA-TCCTCACCGTAACAATCACTC 155858 | ||| |||||||| ||| ||| ||| || || || || |||| || Sbjct 58565 TCTTTTCTTCTTCATATTTTTCATAAAGC-TTCTCAAATTCTTCCCCCCAACAGTCTGCA 58507 Query 155859 AGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCT 155916 || || || || | || || || | || |||| | | ||| | || || | | Sbjct 58506 AGACCGGGACAGTCATGTGGACACATGAGGCTCCAATTCTCATT--CTTTTCAACTCTTT 58449 Query 155917 CCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCAT 155976 ||| || | || ||| | |||||| || || || || || | || || | Sbjct 58448 TCATGAACAGGTCTGGGATCCAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCT 58389 Query 155977 CGCC-GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGA 156035 || ||| ||||| || || || ||||| | ||||| || || || || Sbjct 58388 TACCAGTG-TTCTTTTTTAAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGG 58330 Query 156036 TACATAGCAAAACTACCATTCC---TCTTGCCACCCTGATCTACATACCGAGCAGTCTTA 156092 || || |||||| ||| | | |||||||||||||| ||||| | || || ||| Sbjct 58329 TAGATGGCAAAAGCTCCAGGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTA 58270 Query 156093 TTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGC 156152 ||| | || | | ||| |||| || |||||| ||| ||||| ||||| ||| | Sbjct 58269 TTGTACACCCGCAACATGGGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAA 58210 Query 156153 GAACCAGATGAGCGAACAT--TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAA 156210 | ||| | ||| || ||| | ||| ||||| || || || | | ||||||| Sbjct 58209 GTACC--TTTAGCTCTTATGCAATGGACATGAAGTCCTATGCCTCCAGCAGACTTAGAAA 58152 Query 156211 TTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATA 156270 | || |||| ||| | || | | |||||||||||| |||||||| ||| | | Sbjct 58151 TCAATGCACATTGCTTCAATGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAA 58092 Query 156271 GTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTG 156330 | | || || || ||| |||||||| || |||| || |||||||| | | Sbjct 58091 TCAAGAAACAAGAGGATAGTTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGG 58032 Query 156331 CATGAATAAAATACTTATTAGACATATAA-TCGTATGTCTCCTTAAT--CTTC-TCAAGA 156386 | || | || || || | || | |||| | |||||| ||||| || | |||| | Sbjct 58031 CGTGTGTGAAGTATTTTTCTGATA-ATAAGTTGTATGT---ATTAATTGCTGCATCAATA 57976 Query 156387 TTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 | || ||||| | ||||| || | ||| ||| || || ||||| ||| ||| Sbjct 57975 TCTTCTCCATGAATTCCAATAGAAACTCGCATAAGCATGTGTTGGGGACGTTCTGCAA 57918 >seq155 Length=1644524 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/140 (75%), Gaps = 7/140 (5%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||| | || ||| || ||||| | |||||||| ||||||| ||||||||||| Sbjct 1303532 AATTTCCTTAAGACGCGGTACACCCAGAGTTACGTTT---TTGGACGACACACCAGCAAA 1303476 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCA-CCAAT-ACTTTGTGCCGCAATC 301932 |||||||| ||||| || | ||||||| |||||| ||||| || || || || | Sbjct 1303475 ATGGAAAGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCCAATGAC--TGAGCTGCTAAA 1303418 Query 301933 ATACCAACCATTTCTCCTGG 301952 || |||||||||||||| Sbjct 1303417 GCTCCCACCATTTCTCCTGG 1303398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471252303836249