Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq29477 147 3e-29 seq6 116 5e-20 seq70 100 3e-15 seq10213 87.8 2e-11 seq672 86.0 8e-11 >seq29477 Length=283 Score = 147 bits (162), Expect = 3e-29 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | || | ||| | ||||| | ||| | || | Sbjct 280 GCTTGGCCAGCTCACCGGGCAGCAAAAGCCTCACCGAAGTCTGCACCTCCCTCGAAGTAA 221 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| ||||||||| |||| |||| |||| || |||| | ||||||| |||| | Sbjct 220 TCGTGGAGCGCTTGTTGTAGTGGGCCAAACGGGACGCTTCGGCGGCGATGCGTTCGAAGA 161 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||||||| ||| ||||||| || |||||| | Sbjct 160 TGTCGTTCACGAAGGAGTTCATGATGGACATCGCCTTACTGGAGATACCGGTGTCGGGAT 101 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||||||||| Sbjct 100 GCACCTGCTTGAGCACCTTGTAGATG 75 >seq6 Length=1691400 Score = 116 bits (128), Expect = 5e-20 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 869175 GCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGC 869234 || ||||| | || ||| |||| ||| ||||| || | | || |||||||| || | Sbjct 1115146 GCTAACCT-CATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCAC 1115204 Query 869235 GCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 | ||||| |||||||| || | |||| |||||||| ||||||||||||||||| || || Sbjct 1115205 GTTTCTTCAGCCAAAATATTGACGCA-AAACTGCCAGAGAAAAAGATGCCCTCTACAGCA 1115263 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 ||||| ||| | |||||| | || ||| | | | | || | | ||||||| || Sbjct 1115264 GCAAATGCGACAATGCGCTCGCCGAA--TGTTGCAGACTTGCTGGCT-ATCCACTGCAGG 1115320 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 |||||||| ||||| ||| |||| |||||| || || | ||| Sbjct 1115321 GCCCAGTCTGCCTTCTTCTTCACGCACGGCAGGGTTTCAACGGC 1115364 >seq70 Length=337926 Score = 100 bits (110), Expect = 3e-15 Identities = 180/263 (68%), Gaps = 10/263 (4%) Strand=Plus/Minus Query 1573776 CTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCAC 1573835 || || |||||||| |||||||| || | || |||| || ||||| ||||| || Sbjct 280718 CTTCCCTGGATCGAGAAGTATCGGCCACAGACTTTCAACGATATCGTCGGTAACGAAGAC 280659 Query 1573836 GCCGTCGCCTATCTCAGAGCGCTGGCTGC-----CGACGGCGACATGCCCAACCTCTTGC 1573890 | || ||||| | |||| | | || |||| || ||||||| || | Sbjct 280658 ACGGT-----ATCTCGGTTGGCTGTGTTCGCGCGCGCCGGCAACGCGCCCAACATCATCA 280604 Query 1573891 TGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCT 1573950 | ||||| ||||| || ||||||||||| | |||| |||||||||||| | ||| Sbjct 280603 TCGCGGGCCCGCCGGGAGTCGGCAAGACCACCACCATCCTGTGTCTGGCGCGCGCCCTGC 280544 Query 1573951 TGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCG 1574010 | ||| | ||| | | || || || |||||||| ||||| || |||| ||||| ||| Sbjct 280543 TCGGCTCCGCCTTCAAGGACGCGGTACTCGAACTGAACGCCTCCAACGACCGCGGAATCG 280484 Query 1574011 ACGTCGTGCGCAAGATCATCAAG 1574033 | || || || || | |||||| Sbjct 280483 ATGTGGTTCGGAATAAGATCAAG 280461 >seq10213 Length=1528 Score = 87.8 bits (96), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 509089 CGAGATGTTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGAC 509148 |||| | || | |||| ||| ||||| |||||||| ||||||||||| ||||||||||| Sbjct 1052 CGAGTTCTTCTTCCACACGATGGGCGGCCGCGAGGGACTCGTCGACACCGCCGTCAAGAC 1111 Query 509149 GGCCGAGACGGGCTACATCCAGCGCCGG 509176 |||||||| || ||| | ||||| ||| Sbjct 1112 CGCCGAGACCGGATACCTGCAGCGACGG 1139 >seq672 Length=249678 Score = 86.0 bits (94), Expect = 8e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 507737 TACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCG 507796 |||||||| ||||| |||||||||||||||||| ||||| |||| ||| | ||| |||| Sbjct 94956 TACAACGCTGACTTCGACGGCGACGAGATGAACATGCACCTGCCGCAGACGGAGGAGGCG 95015 Query 507797 CGCGCCGAGG 507806 |||||||||| Sbjct 95016 CGCGCCGAGG 95025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104679146997709