Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq852 205 8e-48 seq341 197 1e-45 seq154 127 2e-24 seq504 100 2e-16 seq27819 98.7 8e-16 seq397 96.9 3e-15 >seq852 Length=562639 Score = 205 bits (226), Expect = 8e-48 Identities = 346/496 (70%), Gaps = 4/496 (1%) Strand=Plus/Minus Query 28803 GTCGCTGCGTATTTTGTGGAATGGAGCGTGTACGGCCGCAACTTTTCGGTGGACAAGGTG 28862 |||| ||| || || || |||||| | ||||| ||| || || | |||||||| | Sbjct 33775 GTCGGTGCCTACTTCGTAGAATGGGGTGTGTATCCCCGGAAGTTCCCTGTGGACAAAATT 33716 Query 28863 CCGCTGCCCAACCTCTCGCATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGG 28922 || | || |||||| ||||||| |||||||| ||| | || ||||| || || || || Sbjct 33715 CCAATTCCAAACCTCACGCATCTTTTATACGGGTTCATCCCAATTTGTGGGGGAGATGGC 33656 Query 28923 CTCAACGACGCCCTTAAAACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAAC 28982 |||||||| | || || || ||||| |||| ||||||| || |||| | Sbjct 33655 ATCAACGACAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTTTGCAACGGTCTTGCAGC 33596 Query 28983 GGCCGTTCAGATTTTAAAGTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAA 29042 || || ||| || || || | || |||||||| |||||||| | || ||||| ||| Sbjct 33595 GGTCGAGAAGACTTCAAGGTGTCCATCCACGATCCATGGGCCGCTCTCCAGAAACCACAA 33536 Query 29043 AAGGGCGTGTCTGCGTGGAACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATGGCTGCC 29102 ||||| | || | ||||| || || ||||| ||||| |||||||| || ||| | Sbjct 33535 AAGGGATTATCATCTTGGAATGAACCTTACAAGGGCAACTTCGGTCAACTGATGTCATTG 33476 Query 29103 AAGTTGGCCAATCCACACATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGAC 29162 ||| |||| || || | ||||| || ||||| || || || ||||| | | || Sbjct 33475 AAGCAAGCCAGACCTGACTTAAAAATCCTGCCGTCTATTGGAGGTTGGACTCTTGCTGAT 33416 Query 29163 CCTTT-TTATTTTATGCACGACGCGGAGAA-ACGGCGCGTGTTTGTGGACTCGGTCGAGG 29220 ||||| || || | || | ||| | ||| | || ||| || || | || || ||| Sbjct 33415 CCTTTCTTCTTCTTTG-ATGACAAAGTGAAGAGGGACCGT-TTCGTCAATTCAGTTAAGG 33358 Query 29221 AATTTTTGCAGGTGTGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCG 29280 |||| || | ||||||||| ||||| || || || || || |||||||| || |||| Sbjct 33357 AATTCCTGATGACGTGGAAATTCTTTGATGGTGTCGATATCGATTGGGAATTCCCTGGCG 33298 Query 29281 GTAAAGGCGCTAACCC 29296 | || ||||||||||| Sbjct 33297 GCAAGGGCGCTAACCC 33282 >seq341 Length=686777 Score = 197 bits (218), Expect = 1e-45 Identities = 141/162 (87%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 34490 TGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 ||||||| | || ||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 170816 TGGCCGGCCTGCCCAGCGCCTTGGCCACCTCGGGCATGTTGACGATGACAGTCTTGATGC 170757 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 |||||||||| || || |||||||||||||| | |||||| ||||| || |||||||||| Sbjct 170756 CGTTGCCCTTCCCCTCCACCTTGGCGCAGATCCTCGGCATCTTGTACCGATAGAACGCGT 170697 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTG 34651 |||||||||||||||| ||||| || | |||||||| || || Sbjct 170696 CCGCCACATTGCGGTTCACGTTGACGGACCCCATCGCGGATG 170655 Score = 158 bits (174), Expect = 1e-33 Identities = 135/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 || |||||||| ||||||||||||||||||||||| || ||||| ||| |||||| Sbjct 176199 GCGGGCGGGTTCTTCAGTATGAAGGTGTTGAGCTTGTGGTTGAAGTCGAGCTGGCCGTGG 176140 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 || ||||| || ||||||||||| |||| ||||| || | |||||||| ||||| Sbjct 176139 TAGCCGCACGCCTTGCAGCCCTGCGAGATCGTGTTCCGCTTCGTCGACACGATCAGCTCC 176080 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 |||||||||||||| || || || |||| ||| |||||||||||||| Sbjct 176079 GTCTCCGGGTTGTCGCACTCGGGGCACAGCACGAACTTGCGGATGAA 176033 Score = 123 bits (136), Expect = 2e-23 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || |||| |||||| | ||| ||||||||||| |||||| || ||||| || ||| Sbjct 174636 CCGTCCAGCAAGTCCTGCAGCTTGGCGGAGTCGTGGCTGCCGTTCACTATGAACCGCTCG 174577 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || ||| | |||| ||| || ||||||||||||||||||||||||||||||||||| Sbjct 174576 TTCTTGAAGTCGAACTGGGTCTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 174521 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/156 (72%), Gaps = 8/156 (5%) Strand=Plus/Minus Query 33427 TCCTCGGCCTGCTGCAGCCAGTCCAGGAAGGGCTGCGCGCGGCGCCGCACGTCCGCCA-- 33484 || ||||| | |||||||||||| | |||||||||||| | ||||| || |||| Sbjct 178818 TCGTCGGCGTCCTGCAGCCAGTCTATGAAGGGCTGCGCTCTCTTGCGCACCTCGGCCACG 178759 Query 33485 -TCTCCTCGCG-GCTTAGCGCTTTGCGGGACGGCTTGTAAAACCACTCCACGATCGCTTT 33542 |||||| | | || || ||||| ||||| ||| |||||||| ||||| || Sbjct 178758 ATCTCCTTGGGCGCGTAC----TTGCGCGACGGTTTGGCCGCCCACTCCAGGATCGTCTT 178703 Query 33543 CTTTTCCACCACGTTCAAGTCGTACAGCAGCTTGAA 33578 || ||||| | || | |||||||||||||| ||| Sbjct 178702 CTCGTCCACGATGTCTAGGTCGTACAGCAGCTGGAA 178667 >seq154 Length=1330714 Score = 127 bits (140), Expect = 2e-24 Identities = 188/264 (71%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 103646 CCCGTACACCC-CGAGTATGCAATAGAAGCTGCGCGTTTGCGCACTTTTACCGCGTGGCC 103704 || || ||||| ||| ||||| || || || ||| |||| || || | || ||||| Sbjct 117180 CCGGTGCACCCGCGA-TATGCCTCGGAGGCGGCTCGTCTGCGAACCTTCAGCGACTGGCC 117238 Query 103705 GCGCGGTTTGAAGCAACATCCCGAGATACTTGCCGAAGCTGGTTTCTTTTACACCGGCAA 103764 || | || ||| | |||||| | || ||||| || |||||||||||||| | Sbjct 117239 TCGTTGCATGGGCCAAAAGCCCGAGGAGTTGGCGGAAGCCGGATTCTTTTACACCGGGCA 117298 Query 103765 AAGCGACAAAGTCAAATGCTTTTACTGCAACGGCGGTCTGAACAATTGGGAGCAAGATGA 103824 | | || ||| ||||| || |||||| |||| |||||||| | |||||| | || || Sbjct 117299 AGGGGATAAAACTAAATGTTTCTACTGCGACGGAGGTCTGAAAGACTGGGAGAACGACGA 117358 Query 103825 CGACCCGTGGCAACAACACGCGCTTTGGTTCGGACGCTGCGCATACGTGCTACTTGTCAA 103884 || ||||||| |||| ||||||| ||||| | || ||||| ||||| | || || || Sbjct 117359 CGTCCCGTGGGAACAGCACGCGCGGTGGTTTGATCGATGCGCTTACGTTCAGCTGGTGAA 117418 Query 103885 AGGCCACGATTATGTACAAAAGGT 103908 ||||| || || || || || || Sbjct 117419 AGGCCGAGACTACGTTCAGAAAGT 117442 >seq504 Length=80497 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||| || | || ||||| || ||||| | ||| ||||| Sbjct 72888 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACTATTACACTGGAAGTTGAGCCATC 72947 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | || ||| || ||| ||||| || || | ||| || || Sbjct 72948 TGACACTATTGAGAATGTCAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCTGACCA 73007 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | ||||| | ||||||||||| ||||| |||| | | ||| || |||| ||||| Sbjct 73008 ACAGCGTCTTATCTTCGCGGGTAAACAACTGGAAGATGGCCGTACACTGTCGGACTACAA 73067 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || ||||| || |||| | ||||| ||| || |||| |||| Sbjct 73068 CATCCAGAAGGAATCCACTCTGCATTTAGTGTTGAGATTGAGAGGAGGAA 73117 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | || ||||| || ||||| | ||| ||||| Sbjct 72661 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACTATTACATTAGAAGTTGAGCCATCG 72720 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || ||| |||||||| || | || || ||| Sbjct 72721 GATACAATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAGGGGATTCCTCCTGACCAA 72780 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | ||| || || || |||| |||| | | ||| || | || |||||| Sbjct 72781 CAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCAGACTACAAC 72840 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| |||||||| || |||| | ||||| ||| || |||| |||| Sbjct 72841 ATTCAGAAAGAATCCACTCTGCATTTAGTGTTGAGATTGAGAGGAGGAA 72889 >seq27819 Length=1354 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| | ||||| || ||||| || | ||| || || Sbjct 1087 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAACCATCT 1146 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | || ||| || ||| |||||||| || | ||| || ||| Sbjct 1147 GACACTATCGAGAATGTCAAAGCCAAAATTCAGGACAAAGAGGGGATTCCCCCTGACCAA 1206 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | ||| || || || |||| |||| | | ||| || |||| |||||| Sbjct 1207 CAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCGGACTACAAC 1266 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || ||||| || |||| | || |||||| ||||||| || Sbjct 1267 ATCCAGAAGGAATCCACTCTGCATTTAGTATTAAGATTGCGAGGAGG 1313 >seq397 Length=962699 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| ||||||||||| || ||||| || ||| | ||| ||||| Sbjct 58666 AATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTTGAGCCATC 58607 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | |||||| || ||| ||||| |||||| | || ||||| Sbjct 58606 CGATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGCATACCACCTGATCA 58547 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | |||| ||||| || || | || || | | || | |||||||||| Sbjct 58546 GCAGCGATTGATTTTCGCGGGCAAGCAATTAGAAGACGGACGTACTCTTTCGGATTACAA 58487 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||||||||||||||| Sbjct 58486 TATTCAAAAAGAATCTAC 58469 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| |||||||| ||||| | ||||| |||||||| ||| | || ||| ||| | Sbjct 56613 ATGCAGATATTTGTTAAAACCCTGACCGGTAAAACCATAACCTTGGAGGTGGAACCTTCC 56554 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||| ||||| |||||| | || || || Sbjct 56553 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 56494 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| |||||||||||| ||||| |||| | || || | || |||||| Sbjct 56493 CAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGTCGCACTCTGTCCGACTACAAC 56434 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 || ||||| || || || | ||| |||| || | || || || || || Sbjct 56433 ATCCAAAAGGAGTCCACTCTCCACTTGGTTTTGCGTCTTCGCGGTGGCAA 56384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||| | ||||| ||||||||||| |||| ||||||| Sbjct 58209 ATGCAGATTTTCGTTAAAACTCTCACCGGTAAAACCATTACTCTCGAGGTGGAGCCTTCT 58150 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | |||||| || ||| |||||||| || | || || ||| Sbjct 58149 GACACCATAGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGTATTCCACCAGACCAA 58090 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| || | ||| ||||| || |||| |||| | || || | || |||||| Sbjct 58089 CAAAGACTGATATTTGCTGGTAAGCAATTGGAAGATGGGCGCACTTTGTCAGACTACAAC 58030 Query 110453 ATTCAAAAAGAATCTAC 110469 || || ||||||||||| Sbjct 58029 ATCCAGAAAGAATCTAC 58013 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| | ||||| |||||||| ||| | ||| ||| ||| Sbjct 57525 ATGCAGATCTTTGTTAAAACCCTGACCGGTAAAACCATCACCTTGGAAGTGGAACCTTCT 57466 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || |||||| |||||||||||| | ||| ||||| Sbjct 57465 GACACCATTGAAAATGTGAAGGCCAAGATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 57406 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||||| | || |||||||| || || |||| | ||| || | || || ||| Sbjct 57405 CAGCGACTTATCTTCGCTGGTAAACAACTAGAAGATGGGCGCACATTGTCCGACTATAAC 57346 Query 110453 ATTCAAAAAGAATCTAC 110469 || || ||||| || || Sbjct 57345 ATCCAGAAAGAGTCCAC 57329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412690770514661