Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq29477 127 3e-23 seq6 109 9e-18 seq70 98.7 2e-14 seq10213 87.8 3e-11 >seq29477 Length=283 Score = 127 bits (140), Expect = 3e-23 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 1485506 CGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGC 1485565 ||||| ||||||| || ||| ||| | || | ||| | ||||| | ||| | | Sbjct 283 CGTGCTTGGCCAGCTCACCGGGCAGCAAAAGCCTCACCGAAGTCTGCACCTCCCTCGAAG 224 Query 1485566 CGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGA 1485625 |||||| ||||||||| | | |||| ||| || |||| | ||||||| |||| Sbjct 223 TAATCGTGGAGCGCTTGTTGTAGTGGGCCAAACGGGACGCTTCGGCGGCGATGCGTTCGA 164 Query 1485626 TCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGG 1485685 |||||||| || || ||||||||||| ||||||| || ||||||| || ||||| Sbjct 163 AGATGTCGTTCACGAAGGAGTTCATGATGGACATCGCCTTACTGGAGATACCGGTGTCGG 104 Query 1485686 GGTGCACCTGCTTGAGCACCTTGTA 1485710 | ||||||||||||||||||||||| Sbjct 103 GATGCACCTGCTTGAGCACCTTGTA 79 >seq6 Length=1691400 Score = 109 bits (120), Expect = 9e-18 Identities = 151/207 (73%), Gaps = 11/207 (5%) Strand=Plus/Plus Query 794356 ATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 794415 |||||||| ||||| || | || |||||||| || || ||||| |||||||| || Sbjct 1115165 ATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCTTCAGCCAAAATATT 1115224 Query 794416 G-CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 | | || |||||||| ||||||||||||||||| || || ||||| |||| | ||||| Sbjct 1115225 GACGCA-AAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAAATGCGACAATGCGCTC 1115283 Query 794475 GGCAAAAGTGTCCAGGCCCTCTTTGTTG---ATCCACTTCATCGCCCACTCTGCCTTTTT 794531 | | || || | ||| | ||| || ||||||| || ||||| |||||||| || Sbjct 1115284 GCCGAATGT-TGCAGAC-----TTGCTGGCTATCCACTGCAGGGCCCAGTCTGCCTTCTT 1115337 Query 794532 CCTCACCGAGGGCACCGTGTCGATGGC 794558 | |||| | |||| || || | ||| Sbjct 1115338 CTTCACGCACGGCAGGGTTTCAACGGC 1115364 Score = 86.0 bits (94), Expect = 1e-10 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 794019 AGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATG 794078 ||||| | ||| || || ||||||||||||| |||||||| || ||||||||||| Sbjct 1114478 AGCAGTCTGTCCGCCACAAATTCAATGTACTCAGACATGAGGTCGCAGTTCATGCCGAGC 1114537 Query 794079 AGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATG 794138 || ||||||||||| || ||| ||||| | |||||| | || || || ||||| Sbjct 1114538 AGGCGCACGGGCAGCGCGTCCGTGAGGAACTCCTGCTCGATGGCCACCGCGTCCTTGATG 1114597 Query 794139 ATCTG 794143 ||||| Sbjct 1114598 ATCTG 1114602 >seq70 Length=337926 Score = 98.7 bits (108), Expect = 2e-14 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 2019196 TGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGG 2019255 ||||| | || || |||||| | | ||| | || ||||| ||| || | ||| || | Sbjct 280341 TGCCGGCGGGTCGACACAAGATAGTGATCTTGGACGAGGCGGACAGCATGACGGAGGGTG 280282 Query 2019256 CCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGG 2019315 | |||||||| || || |||||||| |||| ||| |||||||||||| ||||||| Sbjct 280281 CGCAGCAGGCGCTGCGGCGCACCATGGAGCTGTACTCCAGCACGACGCGGTTCGCGCTGG 280222 Query 2019316 CCTGCAAC-ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 || |||| || || || ||||||| || ||||| || |||||| | | ||| Sbjct 280221 CCGCCAACAACAGCG-AGAAAATCATCGAGCCCATCCAGTCTCGCTGCGCCGTGCTACGC 280163 Query 2019375 TTTGCGCGCCTCACCGACGCCCAGAT 2019400 | |||| |||||||| || ||||| Sbjct 280162 TACTCGCGACTCACCGATGCACAGAT 280137 >seq10213 Length=1528 Score = 87.8 bits (96), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 431075 CGAGATGTTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGAC 431134 |||| | || | |||| ||| ||||| |||||||| ||||||||||| ||||||||||| Sbjct 1052 CGAGTTCTTCTTCCACACGATGGGCGGCCGCGAGGGACTCGTCGACACCGCCGTCAAGAC 1111 Query 431135 GGCCGAGACGGGCTACATCCAGCGTCGG 431162 |||||||| || ||| | ||||| ||| Sbjct 1112 CGCCGAGACCGGATACCTGCAGCGACGG 1139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913057609784903