Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq852 246 2e-60 seq154 221 1e-52 seq397 96.9 3e-15 seq504 95.1 1e-14 >seq852 Length=562639 Score = 246 bits (272), Expect = 2e-60 Identities = 710/1078 (66%), Gaps = 16/1078 (1%) Strand=Plus/Minus Query 28980 GTTGCGGACACGGACGGTGGCCATTTGTCTCCGCTGGAATACGTTTGGCGGGAGAATAAC 29039 || || |||||||||||| |||| || | || ||||| ||| | | ||||| ||| Sbjct 33865 GTAGCTGACACGGACGGTAGCCACTTACCACCCCTGGATTACACCATGGGAGAGAAGAAC 33806 Query 29040 AAGCC-TGGACGGCGCCA---GGACAAGACCGTCGCTGCGTATTTTGTAGAATGGGGCGT 29095 ||||| | | | || ||| ||| |||| ||| || || ||||||||||| || Sbjct 33805 AAGCCCTTCAAGCAAACATCTGGAAAAGTA-GTCGGTGCCTACTTCGTAGAATGGGGTGT 33747 Query 29096 ATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTGCCCAACCTCTCGCATCTGTTGTA 29155 ||| ||| || || || || |||||| | || | || |||||| ||||||| || || Sbjct 33746 GTATCCCCGGAAGTTCCCTGTGGACAAAATTCCAATTCCAAACCTCACGCATCTTTTATA 33687 Query 29156 CGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAACGACGCCCTCAAAACCATTCCCGG 29215 ||| ||||| || ||||| || || || || |||||||| | || || || Sbjct 33686 CGGGTTCATCCCAATTTGTGGGGGAGATGGCATCAACGACAGTTTGAAGGAAATCGAAGG 33627 Query 29216 CAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGTTCAGATTTCAAAGTCGCTATTCA 29275 |||||| | || ||||||| ||||||| || || ||| ||||| || | || || Sbjct 33626 CAGTTTCCAAGCTTTGCAACGGTCTTGCAGCGGTCGAGAAGACTTCAAGGTGTCCATCCA 33567 Query 29276 CGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGCGTGTCTGCGTGGAACGAGCCCTA 29335 |||||| |||||||| | || ||||| |||||||| | || | ||||| || || || Sbjct 33566 CGATCCATGGGCCGCTCTCCAGAAACCACAAAAGGGATTATCATCTTGGAATGAACCTTA 33507 Query 29336 CAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTGGCCAATCCGCACCTCAAAATTCT 29395 ||| || ||||||||||| || ||| | |||| |||| || || | ||||| || Sbjct 33506 CAAGGGCAACTTCGGTCAACTGATGTCATTGAAGCAAGCCAGACCTGACTTAAAAATCCT 33447 Query 29396 GCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTCTATTTCATGCACGAC-GCGGAAA 29454 |||||| || || || ||||| | | || || |||| ||| | | ||| | || Sbjct 33446 GCCGTCTATTGGAGGTTGGACTCTTGCTGATCCTTTCTTCTTCTTTGATGACAAAGTGAA 33387 Query 29455 AACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTTCTGCAGGTGTGGAAGTTTTTTGACG 29514 | || || || || | || || | ||||| ||| | |||||| || ||||| | Sbjct 33386 GAGGGACCGT-TTCGTCAATTCAGTTAAGGAATTCCTGATGACGTGGAAATTCTTTGATG 33328 Query 29515 GCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAAGGCGCCAACCCGACACTTGGCAACG 29574 | || || || || ||||| || || || ||||| ||||| ||||| | || || || Sbjct 33327 GTGTCGATATCGATTGGGAATTCCCTGGCGGCAAGGGCGCTAACCCTAACCTCGG---CG 33271 Query 29575 GGGAGCGCGACGCCGACACGTATAACATTTTACTAAAGGAATTGCGCGCAATGATGGACG 29634 | || | ||| || ||| | ||| | || ||| | || | ||| | ||| Sbjct 33270 GTCCTAAGGATGGCGAAACCTATGTGCTCTTAATGAAAGAACTTCGTGAGATGCTCAACG 33211 Query 29635 AGTTA-CAATTGCAAACGGGCAAAACGTACGAGTTGACAAGCGCAATCAGTTCCGGACAT 29693 ||||| || ||| || ||||| | ||||||| | || || |||||| | || Sbjct 33210 AGTTATCATCTGC-TACTGGCAAGAAGTACGAGCTAACTTCAGCTATCAGTGCTGGTTGG 33152 Query 29694 GACAAGATTGCTGTAGTTAAATAC-GACGCTGCGCAAAAGTTTCTCGATAAAATATTCCT 29752 ||||||||| || || | ||| | ||| || || || | | || | || ||| | Sbjct 33151 GACAAGATTCAAGTGGTCGACTACAGTCGC-GCACAGAACTACATGGACCACATCTTCTT 33093 Query 29753 CATGAGCTACGATTTTAAAGGCGCGTGGTCAAACACCGATTTGGGCTACCAAACTACTCT 29812 ||||| |||||| || || || |||||||| ||| | | || |||| || |||| Sbjct 33092 CATGAACTACGACTTCAAGGGAGCGTGGTCGAACGACACCCTAGGTCACCAGACATCTCT 33033 Query 29813 CTACGCGCCGAGTTGGAACCCAAACGAACTGTACAACACGGACCACGCCGTTAAGTTGCT 29872 ||||| || ||||| || || ||| |||| || || || ||||| | || Sbjct 33032 GTACGCTCCAGCCTGGAATCCTAAGGAAACATACACGACTGATTTCGGTGTTAA-ATACT 32974 Query 29873 CACGAAC-CAGGGCGTGGACCCGCGCAAAATTATTGTGGGCGTCGCCATGTACGGCCGCG 29931 | | || || || | ||| || | | || || || || |||||||| || | Sbjct 32973 TGTTAGCTCAAGGAGTCAATCCGAAGAAGGTCGTAGTTGGTGTTGCTATGTACGGACGTG 32914 Query 29932 GTTGGACAGGCGTGTCGGGTTATGACGGTGACAACTATTTTACGGGCACAGCTGCTGGGC 29991 | ||||| || || || || || |||| || || |||| ||| |||| | Sbjct 32913 GATGGACTGGTGTTCACGGGTACGAAAACGACATTCCCTTCACAGGCAATGCTTCTGGTC 32854 Query 29992 CCGTGACCGGCACTTGGGAAGACGGCGTTGTCGACTATCGCCAAATTGAAAACGAAAT 30049 | || | || || ||| ||||||| || || || || | | |||| || ||||| Sbjct 32853 CTGTCAAAGGTACATGGCAAGACGGTGTGGTGGATTACAGAGAGATTGCGAATGAAAT 32796 >seq154 Length=1330714 Score = 221 bits (244), Expect = 1e-52 Identities = 384/553 (69%), Gaps = 13/553 (2%) Strand=Plus/Plus Query 103526 AATTGGCCGGTACAATTCTTGGAACCGCAACGACTGGCCGCCAACGGGTTCTTCTACTTG 103585 || ||||| ||| |||||| ||| |||| ||| || || || || | || | Sbjct 116895 AAATGGCCCGTATCTTTCTTGTCACCCCAACAACTTGCAAGAAATGGTTTTTATTATCTC 116954 Query 103586 GGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAGATTATGCGCTGGGAGGAG 103645 || |||| ||||||||| | ||||| || |||||||| || ||||||||||||| || Sbjct 116955 GGATGCGGTGACGAAGTGAGATGCGCTTTCTGCAAAGTCGAAATTATGCGCTGGGTCGAA 117014 Query 103646 GGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAGTGTCCGTTCCT--Gaaaa 103703 || ||||| |||||| | ||||| ||||| ||||| || |||||||| || | || || Sbjct 117015 GGTGACGATCCGGCTAGAGATCACCAGAGATGGGCACCCCAGTGTCCATTTTTAAGACAA 117074 Query 103704 aaa--CGGCTGCTGGCGCGCTGCCCGCCGG----CCTTGCGATGGACGGGCAGGACGAGT 103757 || | || || ||| | |||| | | || || ||||| | || || | Sbjct 117075 CAAGCCAGC-GCAGGCAACGT-CCCGTCAGAAACCCCAGCTTCCGACGGACGCGATGAAT 117132 Query 103758 GCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTGCGTGCGCATGCCCGGCCCCGCGCACC 103817 |||| || || |||| || ||| ||| | ||||| ||||| ||||| | ||||| Sbjct 117133 GCGGAGTCAGGGCGCCTCCTTCCGTGAACTCG---GTGCGAATGCCTGGCCCGGTGCACC 117189 Query 103818 CTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAAGGATTGGCCCCGGAGTCTGA 103877 | || | ||||| ||||| | | | | ||| || | || ||||| || | || Sbjct 117190 CGCGATATGCCTCGGAGGCGGCTCGTCTGCGAACCTTCAGCGACTGGCCTCGTTGCATGG 117249 Query 103878 AACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTACACCGGCCACAGCGACAACA 103937 || || || ||| || |||| ||||||||||||| |||||||| || | || || | Sbjct 117250 GCCAAAAGCCCGAGGAGTTGGCGGAAGCCGGATTCTTTTACACCGGGCAAGGGGATAAAA 117309 Query 103938 CGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAGCACGATGATGAGCCGTGGC 103997 | ||||| |||||||||||||| ||||| || || |||||| |||| || | |||||| Sbjct 117310 CTAAATGTTTCTACTGCGACGGAGGTCTGAAAGACTGGGAGAACGACGACGTCCCGTGGG 117369 Query 103998 AACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTACTTGTCAAGGGCCACGATT 104057 |||| ||||||| | ||| || ||||| ||||| | || || || |||| || | Sbjct 117370 AACAGCACGCGCGGTGGTTTGATCGATGCGCTTACGTTCAGCTGGTGAAAGGCCGAGACT 117429 Query 104058 ATGTACAAAAGGT 104070 | || || || || Sbjct 117430 ACGTTCAGAAAGT 117442 Score = 82.4 bits (90), Expect = 6e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 104291 AACGTGTGTTTTGTGCCGTGCGGGCATGTGGTGGCGTGCGTCAAGTGCGCGTTTGCTTTG 104350 ||||| ||||| |||||||||||||| ||||||||||||| |||||| ||| | || Sbjct 117618 AACGTTTGTTTCGTGCCGTGCGGGCACGTGGTGGCGTGCGCCAAGTGTGCGCTGGCCACC 117677 Query 104351 GCCGAGTGCCCCATGTGCCG 104370 | | ||||||| |||||||| Sbjct 117678 GACAAGTGCCCGATGTGCCG 117697 >seq397 Length=962699 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| ||||||||||| || ||||| || ||| | ||| ||| | Sbjct 58666 AATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTTGAGCCATC 58607 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | |||||| ||| ||| || || |||||| | || ||||| Sbjct 58606 CGATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGCATACCACCTGATCA 58547 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | |||| ||||| || || | || |||| || | |||| ||||| Sbjct 58546 GCAGCGATTGATTTTCGCGGGCAAGCAATTAGAAGACGGACGTACTCTTTCGGATTACAA 58487 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| || ||||| | ||| | || ||| | || || || || Sbjct 58486 TATTCAAAAAGAATCTACTCTTCACCTCGTCTTGCGTTTACGTGGAGG 58439 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| | || || |||||||| ||| | || ||| || | Sbjct 56613 ATGCAGATATTTGTTAAAACCCTGACCGGTAAAACCATAACCTTGGAGGTGGAACCTTCC 56554 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || |||||| | || || ||| Sbjct 56553 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 56494 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | |||| |||||||||||| ||||| || | || || | ||||||||| Sbjct 56493 CAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGTCGCACTCTGTCCGACTACAAC 56434 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT 107786 || ||||||||||| || | ||| |||| ||| | | || || || ||| Sbjct 56433 ATCCAAAAGGAGTCCACTCTCCACTTGGTTTTGCGTCTTCGCGGTGGCAAT 56383 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || |||||||| |||||||| || ||| | ||| ||| | Sbjct 57981 ATGCAGATCTTTGTAAAGACTTTAACTGGCAAAACAATAACCTTAGAAGTTGAGTCATCG 57922 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || ||||| || ||||||||| | || |||||| Sbjct 57921 GATACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 57862 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | |||| || ||||||||| |||| || | || || | ||||| ||| Sbjct 57861 CAGAGATTGATTTTCGCAGGTAAACAGTTGGAAGATGGTCGCACTTTGTCTGACTATAAC 57802 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 57801 ATCCAGAAGGAGTCCAC 57785 >seq504 Length=80497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || |||||||| || | || ||||| || ||||| | ||| ||| | Sbjct 72888 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACTATTACACTGGAAGTTGAGCCATC 72947 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || ||| || ||| || || || || | ||| || || Sbjct 72948 TGACACTATTGAGAATGTCAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCTGACCA 73007 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | ||||| | ||||||||||| ||||| || | | ||| || |||||||||| Sbjct 73008 ACAGCGTCTTATCTTCGCGGGTAAACAACTGGAAGATGGCCGTACACTGTCGGACTACAA 73067 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| || ||||| || || |||| | |||||||||||| |||| |||| Sbjct 73068 CATCCAGAAGGAATCCACTCTGCATTTAGTGTTGAGATTGAGAGGAGGAA 73117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398731072480153