Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq397 138 2e-27 seq27819 100 4e-16 seq504 96.9 5e-15 >seq397 Length=962699 Score = 138 bits (152), Expect = 2e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || || ||||| |||||| | || || || | | | Sbjct 58208 TGCAGATTTTCGTTAAAACTCTCACCGGTAAAACCATTACTCTCGAGGTGGAGCCTTCTG 58149 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||||||| |||||| ||| ||||| || |||||||| || |||| Sbjct 58148 ACACCATAGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGTATTCCACCAGACCAAC 58089 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| ||||| ||||| || ||| | || || |||| || || | Sbjct 58088 AAAGACTGATATTTGCTGGTAAGCAATTGGAAGATGGGCGCACTTTGTCAGACTACAACA 58029 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || |||||||| ||| | |||||||||||||| Sbjct 58028 TCCAGAAAGAATCTACTCTTCATTTAGTATTACG 57995 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| || ||||| || || | || || || | || Sbjct 58664 TGCAAATTTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTTGAGCCATCCG 58605 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| ||||| ||| || |||||||| ||||| ||||| | Sbjct 58604 ATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGCATACCACCTGATCAGC 58545 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||| || || || |||||||| || | || | | ||||| |||| Sbjct 58544 AGCGATTGATTTTCGCGGGCAAGCAATTAGAAGACGGACGTACTCTTTCGGATTACAATA 58485 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| ||| | || | || || || ||| | ||||| Sbjct 58484 TTCAAAAAGAATCTACTCTTCACCTCGTCTTGCGTTTACGTGGAGG 58439 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || |||| || ||||| || |||||||| || | || || || ||| Sbjct 57980 TGCAGATCTTTGTAAAGACTTTAACTGGCAAAACAATAACCTTAGAAGTTGAGTCATCG- 57922 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| | ||||| || || || || |||||||||||||| || ||||| Sbjct 57921 GATACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 57862 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | ||||| ||||||||||| || || ||| | | || || | || ||||| Sbjct 57861 CAGAGATTGATTTTCGCAGGTAAACAGTTGGAAGATGGTCGCACTTTGTCTGACTATAAC 57802 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || || || || || || | ||| |||| Sbjct 57801 ATCCAGAAGGAGTCCACCCTTCATCTAGT 57773 Score = 89.7 bits (98), Expect = 8e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || ||||| || || | || || |||| | || Sbjct 57068 TGCAGATCTTTGTTAAAACCCTGACTGGTAAAACCATCACCTTGGAGGTGGAACCTTCCG 57009 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || || || || || ||||||||||| || || || | Sbjct 57008 ACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAGC 56949 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | ||||||||||||||||| || || ||| | | || || | || ||||| | Sbjct 56948 AGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTCGCACTTTGTCTGACTATAACA 56889 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || |||||||| || | ||| | || || || Sbjct 56888 TCCAGAAAGAATCCACCCTTCATCTGGTGTTGCG 56855 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| || || | || || |||| | || Sbjct 56612 TGCAGATATTTGTTAAAACCCTGACCGGTAAAACCATAACCTTGGAGGTGGAACCTTCCG 56553 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || || || || || ||||||||||| || || || | Sbjct 56552 ACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAGC 56493 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | |||||||| ||||||||| | || ||| | | || | | || || || | Sbjct 56492 AGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGTCGCACTCTGTCCGACTACAACA 56433 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| || || ||| |||| || || || || Sbjct 56432 TCCAAAAGGAGTCCACTCTCCACTTGGTTTTGCG 56399 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || ||||| || || | || || |||| | | Sbjct 57524 TGCAGATCTTTGTTAAAACCCTGACCGGTAAAACCATCACCTTGGAAGTGGAACCTTCTG 57465 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || || || || |||||||||||||| || ||||| | Sbjct 57464 ACACCATTGAAAATGTGAAGGCCAAGATTCAGGACAAAGAAGGCATTCCCCCAGATCAGC 57405 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || || ||||||||| |||| ||| | || || | || ||||| | Sbjct 57404 AGCGACTTATCTTCGCTGGTAAACAACTAGAAGATGGGCGCACATTGTCCGACTATAACA 57345 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || ||||| || || | ||| | ||||| || Sbjct 57344 TCCAGAAAGAGTCCACCCTTCATCTGGTATTGCG 57311 >seq27819 Length=1354 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| || || | || ||| | || || || || || || | || || || | || | Sbjct 632 TGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACATTAGAAGTTGAGCCATCA- 690 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | |||||||| |||||| ||| ||||| || ||||| || || ||| Sbjct 691 GACACAATTGAGAATGTAAAGGCTAAAATCCAAGACAAAGAGGGGATTCCTCCTGACCAA 750 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || |||| |||||||| || || |||||||| ||| | || | | || || || Sbjct 751 CAGCGACTTATTTTTGCCGGCAAGCAATTAGAAGATGGACGCACTCTTTCCGACTACAAC 810 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || || ||||| ||| | ||||||||||| |||| ||||||||| Sbjct 811 ATTCAGAAGGAATCCACTCTTCATTTAGTATTGAGATTGCGAGGAGGTA 859 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || || || || ||| | || || |||| | Sbjct 176 TGCAGATCTTTGTCAAAACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAACCATCTG 235 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| ||||| || || || || ||||| || || || | Sbjct 236 ATACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCTGACCAGC 295 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||| || || || || || || || ||| | || | | |||||||||| Sbjct 296 AGCGTCTCATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGATTATAATA 355 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| ||| | ||||||||||| |||| ||||||||| Sbjct 356 TCCAGAAAGAATCCACTTTGCATTTAGTATTGAGATTGCGAGGAGGTA 403 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || || || || ||| | || || |||| | Sbjct 1088 TGCAGATCTTTGTCAAAACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAACCATCTG 1147 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | ||||| ||| ||||| || ||||| || ||||| || || |||| Sbjct 1148 ACACTATCGAGAATGTCAAAGCCAAAATTCAGGACAAAGAGGGGATTCCCCCTGACCAAC 1207 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| || || ||||| || ||| | || | | || || || | Sbjct 1208 AACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCGGACTACAACA 1267 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| ||| | |||||||||||| |||| ||||||||| Sbjct 1268 TCCAGAAGGAATCCACTCTGCATTTAGTATTAAGATTGCGAGGAGGTA 1315 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || | || || || || || ||| | || || |||| | Sbjct 860 TGCAGATCTTCGTTAAGACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAACCATCTG 919 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| ||||| || || || || ||||| || || || | Sbjct 920 ATACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCTGACCAGC 979 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||| || || || || || || || ||| | || | | |||||||||| Sbjct 980 AGCGTCTCATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGATTATAATA 1039 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || | ||||||||| | || ||||||| |||| Sbjct 1040 TCCAGAAAGAATCCACCTTGCATTTAGTACTTCGTCTAAGAGGTGGTA 1087 >seq504 Length=80497 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||| | || ||||| || || || | || || || | | Sbjct 73897 TGCAGATCTTTGTGAAGACACTCACCGGAAAGACCATCACATTGGAGGTTGAGCCATCTG 73956 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || ||||| ||| ||||| || ||||| || || |||| Sbjct 73957 ACACTATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAGGGGATTCCCCCTGACCAAC 74016 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| || || ||||| || || | || | | || || || | Sbjct 74017 AACGTCTTATCTTTGCCGGCAAGCAATTGGAAGACGGCCGTACACTGTCGGACTACAACA 74076 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| ||| | ||||||||||| |||| |||||||||| Sbjct 74077 TCCAGAAAGAATCCACTCTGCATTTAGTATTGAGATTGAGAGGAGGTA 74124 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||| | || || || || ||||| | || || || | | Sbjct 73118 TGCAGATCTTTGTCAAGACACTCACTGGCAAGACTATTACACTGGAAGTTGAGCCATCGG 73177 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||||| ||| |||||||||||||| || || |||| Sbjct 73178 ATACAATTGAGAATGTTAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAAC 73237 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| || || || | || ||| | || | | || || || | Sbjct 73238 AACGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTCTCCGACTACAACA 73297 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||||||| | ||||||||| | || ||||||| |||| Sbjct 73298 TCCAGAAGGAATCGACTCTTCATTTAGTACTTCGTCTAAGAGGTGGTA 73345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785871813622840