Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq28624 190 5e-43 seq155 122 2e-22 >seq28624 Length=432676 Score = 190 bits (210), Expect = 5e-43 Identities = 496/745 (67%), Gaps = 25/745 (3%) Strand=Plus/Plus Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| ||||||||| || | || ||| | ||||| ||||||||| | |||||| | Sbjct 57923 GAACGTCCCCAACACATGCTTATGCGAGTTTCTATTGGAATTCATGGAGAAGATATTGAT 57982 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT--ATTCATGCTACTCCTA 110481 || | ||| | || | ||||| | | || || || | || || | ||||| Sbjct 57983 GCAGCAATTAATACATACAACTTATTA--TCAGAAAAATACTTCACACACGCCAGTCCTA 58040 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATT 110540 | || ||| || | ||| || |||| | | ||||| |||||| | | || Sbjct 58041 CACTTTTTTCTGCTGCTACTCCACGACCACAACTATCCTCTTG-TTTCTTGATTGCTATG 58099 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || |||||| |||||||||||| ||||| | | || || ||| | |||||||| Sbjct 58100 AAAGATGATAGTATTGAAGGTATCTATGACACATTGAAGCAATGTGCATTGATTTCTAAG 58159 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 ||||||| || || |||| || ||| || | | ||||| | | || || Sbjct 58160 TCTGCTGGAGGCATAGGACTTCATGTCCATTGCATAAGAGCTAAAGGTACTTACATTGCT 58219 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | | || |||| ||| | ||| |||||||| ||||| | || | ||| |||| ||| Sbjct 58220 GGAACAAATGGTGTTTCTAATGGTCTTGTTCCCATGTTGCGGGTGTACAATAACACAGCA 58279 Query 110721 AAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCT 110777 | |||||| |||| ||||| || | | | || | ||||| ||||| || ||||| Sbjct 58280 AGATATGTTGATCAGGGTGGCAATAAACGTCCTGGAGCTTTTGCCATCTACCTAGAACCC 58339 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAA----GGATTTGAAGA 110833 ||||| | ||| |||| ||||| || || || |||||| || || ||||| Sbjct 58340 TGGCACGCTGATGTATTCGAATTTTTGGA--TT--TAAAAAAGAACACTGGTAAGGAAGA 58395 Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893 | | | || | || | |||||||| | ||||| |||| | ||||||||| | || Sbjct 58396 AGTACGTGCCAGAGAACTGTTTTATGCTCTCTGGATCCCAGACCTGTTCATGAAAAGAGT 58455 Query 110894 TCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA-TG 110952 | || | |||| | ||| || |||||||| ||| | ||| ||||| | || || Sbjct 58456 TGAAAAGAATGAGAATTGGAGCCTCATGTGTCCACATGACTGTCCCGGTCTTGCAGACTG 58515 Query 110953 TATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCA 111012 | | || |||| ||||| | ||||| |||||||||||| ||||| | ||| || Sbjct 58516 T-TGGGGGGAAGAATTTGAGAAGCTTTATGAAAAATATGAAGAAGAAAAGAGATTTGTCA 58574 Query 111013 AACAAATTCCAGCTCAAGAACTTTGGTTCAAA---ATCCTTGAATCACAAGTTGAAACTG 111069 | ||| || |||| || ||| || ||| || ||||| ||||||| ||||||| Sbjct 58575 AGCAAGTTAGGGCTC---AAATTTTGTGGAAAGCTATTGTTGAAGCACAAGTGGAAACTG 58631 Query 111070 GAACTCCTTATATTTTGTATAAAGA 111094 | || || | ||| | || ||||| Sbjct 58632 GCACACCATTTATGCTTTACAAAGA 58656 >seq155 Length=1644524 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||||| || |||||| |||| | |||||| | |||||| ||||||| |||||| Sbjct 1301493 AGACATTTGAGGGATGATGATTTGGTTATCTTCAATCGTCAACCAACACTGCACAAAATG 1301552 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| |||| || ||||| | || | | ||||| ||| | || ||||| Sbjct 1301553 AGTATGATGGGACATAGGGTTAAAGTTCTCCCTTGGTCTACATTCCGAATGAACTTAAGT 1301612 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | || || ||||| ||||||||||||||||| |||||| ||||||| || || Sbjct 1301613 TGCACTTCCCCATACAATGCTGATTTTGATGGAGATGAGATGAATTTGCATGTGCCACAG 1301672 Query 305486 TC 305487 || Sbjct 1301673 TC 1301674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186356968568897