Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq154 138 9e-28 seq397 114 1e-20 seq504 109 4e-19 seq27819 105 5e-18 >seq154 Length=1330714 Score = 138 bits (152), Expect = 9e-28 Identities = 364/555 (66%), Gaps = 27/555 (5%) Strand=Plus/Plus Query 99587 ACATACGTCAACTGGCCTGTGTCTTTTTTGGAACCAAGTCAAATGGCCGCCAACGGGTTT 99646 |||| || || ||||| || ||||| ||| ||| ||| | || || || ||| Sbjct 116886 ACATTCGAGAAATGGCCCGTATCTTTCTTGTCACCCCAACAACTTGCAAGAAATGGTTTT 116945 Query 99647 TATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGAAATAATGCGC 99706 |||||| | || ||| ||||||||| | ||||| || |||||||| ||||| |||||| Sbjct 116946 TATTATCTCGGATGCGGTGACGAAGTGAGATGCGCTTTCTGCAAAGTCGAAATTATGCGC 117005 Query 99707 TGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCAATGCCCGTTT 99766 ||| | || || ||||| |||||| |||||| | ||||||| || || || || ||| Sbjct 117006 TGGGTCGAAGGTGACGATCCGGCTAGAGATCACCAGAGATGGGCACCCCAGTGTCCATTT 117065 Query 99767 ATGCAGCAG-AATCGAACGGTTGCTACGGTCATTCAATCACCAGTGCAAATTGTTAGTAA 99825 | || || | | || || ||| | ||| ||| || || | | Sbjct 117066 TTAAGACAACAAGCCAGCGCAGGCAACGTCCCGTCAGAAACCCCAGC---TTCCGACGGA 117122 Query 99826 AG--ATGAATGTAAATT---GTCGCGT---------AA---------AATGTCCGGCCCC 99862 | ||||||| | | | ||| | || |||| | ||||| Sbjct 117123 CGCGATGAATGCGGAGTCAGGGCGCCTCCTTCCGTGAACTCGGTGCGAATGCCTGGCCCG 117182 Query 99863 GTGCACCCTAAATACGGCACTAAATCTGCACGTTTAGAAACTTTTGTGGATTGGCCGCTC 99922 |||||||| ||| | | | | | || ||| | ||| || || ||||| | Sbjct 117183 GTGCACCCGCGATATGCCTCGGAGGCGGCTCGTCTGCGAACCTTCAGCGACTGGCCTCGT 117242 Query 99923 AGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGTTTTTATTACACCGGCAAAGGT 99982 | || ||||| || ||| | ||||| |||||||| || | ||||||||| |||| Sbjct 117243 TGCATGGGCCAAAAGCCCGAGGAGTTGGCGGAAGCCGGATTCTTTTACACCGGGCAAGGG 117302 Query 99983 GACAAAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAAGACTGGGAAAGCACCGACGAG 100042 || ||| ||||||||| | |||||||| || || ||||||||||| | | ||||| Sbjct 117303 GATAAAACTAAATGTTTCTACTGCGACGGAGGTCTGAAAGACTGGGAGAACGACGACGTC 117362 Query 100043 CCGTGGCATGAACACGCACGTTGGTTTGATCGCTGCACATACGTGCGGCTTGTAAAGGGT 100102 |||||| | | ||||| || ||||||||||| ||| | ||||| | ||| || || || Sbjct 117363 CCGTGGGAACAGCACGCGCGGTGGTTTGATCGATGCGCTTACGTTCAGCTGGTGAAAGGC 117422 Query 100103 TACGACTACGTGCAG 100117 |||||||| ||| Sbjct 117423 CGAGACTACGTTCAG 117437 >seq397 Length=962699 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| || ||||| || || || ||| ||||| || || Sbjct 58666 AATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTTGAGCCATC 58607 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||| | ||| | || ||| ||||||| ||||| |||||| | || |||||| Sbjct 58606 CGATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGCATACCACCTGATCA 58547 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | | |||| |||||||| ||||||||||| ||| | |||||||| Sbjct 58546 GCAGCGATTGATTTTCGCGGGCAAGCAATTAGAAGACGGACGTACTCTTTCGGATTACAA 58487 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||||||| || || | || ||| | ||||| ||||| Sbjct 58486 TATTCAAAAAGAATCTACTCTTCACCTCGTCTTGCGTTTACGTGGAGG 58439 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||||||||| |||| || || ||||| ||| ||||| ||||| Sbjct 57525 ATGCAGATCTTTGTTAAAACCCTGACCGGTAAAACCATCACCTTGGAAGTGGAACCTTCT 57466 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | ||||| || ||| |||||||||||| | ||| ||||| Sbjct 57465 GACACCATTGAAAATGTGAAGGCCAAGATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 57406 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | ||||| | || || |||||| |||||||| || || ||| || ||| Sbjct 57405 CAGCGACTTATCTTCGCTGGTAAACAACTAGAAGATGGGCGCACATTGTCCGACTATAAC 57346 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || || ||||| || || || ||| | |||||| Sbjct 57345 ATCCAGAAAGAGTCCACCCTTCATCTGGTATTG 57313 >seq504 Length=80497 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || ||| | ||||||||||| ||||| | ||| || || Sbjct 72661 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACTATTACATTAGAAGTTGAGCCATCG 72720 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | |||||| |||||| |||||||| || | || ||| ||| Sbjct 72721 GATACAATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAGGGGATTCCTCCTGACCAA 72780 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||| | ||| ||||| ||||| |||||| || || || |||||| Sbjct 72781 CAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCAGACTACAAC 72840 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || |||||||| || || |||||||| ||||| || |||||||| Sbjct 72841 ATTCAGAAAGAATCCACTCTGCATTTAGTGTTGAGATTGAGAGGAGGA 72888 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || ||| | || || |||||||| || |||| || || Sbjct 73896 ATGCAGATCTTTGTGAAGACACTCACCGGAAAGACCATCACATTGGAGGTTGAGCCATCT 73955 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | ||||| |||||| |||||||| || | ||| ||| ||| Sbjct 73956 GACACTATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAGGGGATTCCCCCTGACCAA 74015 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATT--CTAAAACTATGGGCGATTACA 106437 ||| | ||||| | ||| ||||| ||||| ||||| | | ||| | || | |||| Sbjct 74016 CAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGACGGCCGTACACTGTCGG--ACTACA 74073 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||| || |||||||| || || |||||||||||||| || ||||||| Sbjct 74074 ACATCCAGAAAGAATCCACTCTGCATTTAGTATTGAGATTGAGAGGAGG 74122 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| || ||| | ||||||||||| ||||| ||||| || || Sbjct 72888 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACTATTACACTGGAAGTTGAGCCATC 72947 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || ||| | || ||| |||||| ||||| || || | ||| ||| || Sbjct 72948 TGACACTATTGAGAATGTCAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCTGACCA 73007 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTAC 106436 ||| | ||||| | ||||| |||||| | |||||| | | ||| | | || ||| Sbjct 73008 ACAGCGTCTTATCTTCGCGGGTAAACAACTGGAAGATGGCCGTACACTGTCG--GACTAC 73065 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||||| || || ||||| || || |||||||| ||||| || |||||||| Sbjct 73066 AACATCCAGAAGGAATCCACTCTGCATTTAGTGTTGAGATTGAGAGGAGGA 73116 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| || ||| | ||||||||||| ||||| ||||| || || Sbjct 73116 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACTATTACACTGGAAGTTGAGCCATC 73175 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || ||| |||||| |||||||||||| | || ||| || Sbjct 73176 GGATACAATTGAGAATGTTAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 73235 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | ||||| | ||| ||||| || | |||||| ||| | ||| ||||| Sbjct 73236 ACAACGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTCTCCGACTACAA 73295 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTA 106469 ||| || || ||||| || || ||||||||| Sbjct 73296 CATCCAGAAGGAATCGACTCTTCATTTAGTA 73326 >seq27819 Length=1354 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| | || || |||||||| || ||||| ||||| Sbjct 1087 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAACCATCT 1146 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | || ||| |||||| |||||||| || | ||| ||| ||| Sbjct 1147 GACACTATCGAGAATGTCAAAGCCAAAATTCAGGACAAAGAGGGGATTCCCCCTGACCAA 1206 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATT--CTAAAACTATGGGCGATTACA 106437 ||| | ||||| | ||| ||||| ||||| |||||| | | ||| | || | |||| Sbjct 1207 CAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCGG--ACTACA 1264 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||| || || ||||| || || ||||||||||| || || |||||||| Sbjct 1265 ACATCCAGAAGGAATCCACTCTGCATTTAGTATTAAGATTGCGAGGAGG 1313 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || ||| | |||||||||||||| || | ||| || || Sbjct 631 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACATTAGAAGTTGAGCCATCA 690 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || || ||||| |||||||| || | || ||| ||| Sbjct 691 GACACAATTGAGAATGTAAAGGCTAAAATCCAAGACAAAGAGGGGATTCCTCCTGACCAA 750 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | ||||||| ||| ||||| |||||||||||| ||| | ||| |||||| Sbjct 751 CAGCGACTTATTTTTGCCGGCAAGCAATTAGAAGATGGACGCACTCTTTCCGACTACAAC 810 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || ||||| || || |||||||||||||| || |||||||| Sbjct 811 ATTCAGAAGGAATCCACTCTTCATTTAGTATTGAGATTGCGAGGAGG 857 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || ||||| || | ||||||||||| ||||| | ||| || || Sbjct 403 ATGCAGATCTTCGTTAAGACCCTTACTGGCAAGACTATTACATTAGAAGTTGAGCCATCG 462 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | |||||| |||||| ||||| ||||| | ||| ||| ||| Sbjct 463 GACACAATTGAAAATGTGAAAGCTAAAATTCAGGACAAGGAAGGAATTCCCCCTGACCAA 522 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | ||||| | ||| ||||| ||||| |||||| || | ||| |||||| Sbjct 523 CAGCGTCTTATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCCTCTCCGACTACAAC 582 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || || || ||||| ||||| ||||||||| Sbjct 583 ATCCAGAAGGAATCAACACTTCATTTAGTA 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402182611018016