Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq29477 122 1e-21 seq6 114 2e-19 seq70 89.7 7e-12 >seq29477 Length=283 Score = 122 bits (134), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||||||||||||||| ||| |||| | ||| |||| ||| | Sbjct 76 ATCTACAAGGTGCTCAAGCAGGTGCATCCCGACACCGGT-----ATC-TCCAGTAAGGCG 129 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || || |||||||| |||| ||||||| | |||| || Sbjct 130 ATGTCCATCATGAACTCCTTCGTGAACGACATCTTCGAACGCATCGCCGCCGAAGCGTCC 189 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | || |||||||||| |||||| || | ||| | ||||| | ||| Sbjct 190 CGTTTGGCCCACTACAACAAGCGCTCCACGATTACTTCGAGGGAGGTGCAGACTTCGGTG 249 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACG 725124 | || | ||| ||| || ||||||| ||||| Sbjct 250 AGGCTTTTGCTGCCCGGTGAGCTGGCCAAGCACG 283 >seq6 Length=1691400 Score = 114 bits (126), Expect = 2e-19 Identities = 162/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAAC 1456155 ||| | || || |||||| |||| ||| ||||| |||||||| || ||||||| | | Sbjct 1115364 GCCGTTGAAACCCTGCCGTGCGTGAAGAAGAAGGCAGACTGGGCCCTGCAGTGGAT-AGC 1115306 Query 1456156 AAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCT 1456214 || | | | | ||| || | |||||| | |||| ||||| || || |||||||||| Sbjct 1115305 CAGCAAGTCTGCAACA-TTCGGCGAGCGCATTGTCGCATTTGCTGCTGTAGAGGGCATCT 1115247 Query 1456215 TTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 ||||||| |||||||| |||| | || |||||||| ||||| || || |||||||| || Sbjct 1115246 TTTTCTCTGGCAGTTT-TGCGTCAATATTTTGGCTGAAGAAACGTGGTCTCATGCCTGG- 1115189 Query 1456274 CTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGTT 1456313 || || ||||| ||||| || ||| || || ||| Sbjct 1115188 ATTGACTTTCAGCAATGAATTGATTTCTCGGGATGAGGTT 1115149 >seq70 Length=337926 Score = 89.7 bits (98), Expect = 7e-12 Identities = 178/262 (68%), Gaps = 10/262 (4%) Strand=Plus/Plus Query 333080 TTGATGATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACG 333139 ||||| | || || || || || | ||||| |||| || ||||| |||||||| || Sbjct 280462 TTGATCTTATTCCGAACCACATCGATTCCGCGGTCGTTGGAGGCGTTCAGTTCGAGTACC 280521 Query 333140 GCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTG 333199 || || | | ||| | || | ||| |||||||||| ||| |||| | ||||||||| Sbjct 280522 GCGTCCTTGAAGGCGGAGCCGAGCAGGGCGCGCGCCAGACACAGGATGGTGGTGGTCTTG 280581 Query 333200 CCCGTGCCGGGCGGACCCGCCAGCAAGAGGTTGGGCATGTTGCCGTCG---GCGGCCAGC 333256 || || ||||| ||||| | | || ||||||| ||||||| || ||| || Sbjct 280582 CCGACTCCCGGCGGGCCCGCGATGATGATGTTGGGCGCGTTGCCGGCGCGCGCGAACACA 280641 Query 333257 GCC--TTGAGGTAGGCAACGGCGTGCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGC 333314 ||| ||| | || | || ||||| ||||| || |||| || | ||| | Sbjct 280642 GCCAACCGAGAT-----ACCGTGTCTTCGTTACCGACGATATCGTTGAAAGTCTGTGGCC 280696 Query 333315 GGTACTTTTCGATCCATGGGAG 333336 | ||||| |||||||| || || Sbjct 280697 GATACTTCTCGATCCAGGGAAG 280718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174919863252274