Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq397 163 3e-35 seq87 111 1e-19 seq504 96.9 3e-15 seq27819 89.7 5e-13 >seq397 Length=962699 Score = 163 bits (180), Expect = 3e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 35502 CTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 ||| ||| ||||| || | | ||| ||||| || | || ||||||||| ||||||| Sbjct 56379 CTTAATTGCCACCGCGAAGACGCAAAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGT 56438 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 | |||| || || || | || ||||| || ||||||||||| ||||| | |||||||| Sbjct 56439 AGTCGGACAGAGTGCGACCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGCTGGT 56498 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCG 35681 | | ||||| || ||||||||| |||||| ||||| | || | | |||||| | Sbjct 56499 CTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGGAAG 56558 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||||||| || || |||||||| |||| ||||| |||||||||||||| Sbjct 56559 GTTCCACCTCCAAGGTTATGGTTTTACCGGTCAGGGTTTTAACAAATATCTGCAT 56613 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||||| ||| | || || || || ||||| || || | | Sbjct 56843 CCACCACGGAGACGCAACACCAGATGAAGGGTGGATTCTTTCTGGATGTTATAGTCAGAC 56902 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| ||| ||||| ||||| ||||| | ||||||||| | |||| Sbjct 56903 AAAGTGCGACCATCTTCCAACTGTTTACCTGCAAAAATCAATCTCTGCTGGTCTGGAGGA 56962 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||||| | || | | |||||| | ||||||| Sbjct 56963 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACC 57022 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 57023 TCCAAGGTGATGGTTTTACCAGTCAGGGTTTTAACAAAGATCTGCAT 57069 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| ||| | || ||| || || ||||| || |||| | Sbjct 56615 CCACCACGGAGACGCAGCACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGAC 56674 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| || |||||||| || || | ||||||||||| | ||| Sbjct 56675 AAAGTGCGACCATCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGCTGGTCTGGGGGA 56734 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || || |||||| ||||| ||||| | || | | ||||| | ||||||| Sbjct 56735 ATGCCTTCTTTGTCCTGAATCTTGGCCTTCACATTTTCAATGGTGTCAGAAGGTTCCACC 56794 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 56795 TCCAAGGTGATGGTTTTACCAGTCAGGGTTTTAACAAAGATCTGCAT 56841 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| ||| | || ||| || || ||||| || || | | Sbjct 57527 CCACCACGGAGACGCAGCACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCAGAC 57586 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| || |||||||| || || | ||||||||||| | ||| Sbjct 57587 AAAGTGCGACCATCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGCTGGTCTGGGGGA 57646 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||||| | || | | ||||| | |||||| Sbjct 57647 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCAGAAGGCTCCACC 57706 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 57707 TCCAAGGTGATGGTTTTACCGGTCAGGGTTTTAACAAAGATCTGCAT 57753 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || |||||||| | ||| || | || | ||| || |||||||| |||||||| | Sbjct 58439 CCTCCACGTAAACGCAAGACGAGGTGAAGAGTAGATTCTTTTTGAATATTGTAATCCGAA 58498 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || | ||||| ||||| || ||||| |||||||| || | || Sbjct 58499 AGAGTACGTCCGTCTTCTAATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGTGGT 58558 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || |||||||| ||| |||||||| | | || | | || ||| | || || Sbjct 58559 ATGCCTTCCTTGTCT-TGAATTTTTGCTTTTACATTTTCAATTGTATCGGATGGCTCAAC 58617 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 |||| ||||| |||||||| || |||||||||||||| || |||||| || Sbjct 58618 TTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATTGTG 58669 >seq87 Length=431742 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||| ||||||||||| || | Sbjct 313635 CCACCACGAAGACGTAGCACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAA 313576 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| ||||||||||| | |||| Sbjct 313575 AGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGA 313516 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||| |||||| |||||| ||||| | | | | ||||| | |||||| Sbjct 313515 ATGCCCTCTTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCCACC 313456 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || ||||| | || ||||| || || |||||| || Sbjct 313455 TCGAGGGTGATTGTCTTTCCCGTTAGGGTCTTCACGAAGATTTGCATTTTG 313405 >seq504 Length=80497 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | | ||| || | || |||| ||||| || |||||| Sbjct 73535 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAT 73476 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || ||||| || ||||| | |||| | ||||||||| |||||| ||||| | | Sbjct 73475 ATTAACCGTTGTTGGTCAGGGGGAATCCCCTCCTTGTCTTGGATCTTGGCCTTCACATTC 73416 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | || ||||||| ||||| || || || || | || |||||| Sbjct 73415 TCGATAGTGTCAGATGGCTCAACCTCCAATGTGATGGTCTTTCCGGTGAGGGTCTTCACA 73356 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 73355 AAGATCTGCAT 73345 >seq27819 Length=1354 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || || ||||| || ||||| || || || || || || || ||||||| Sbjct 401 CCTCCTCGCAATCTCAATACTAAATGCAAAGTGGATTCTTTCTGGATATTATAATCGGAG 342 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || |||| |||||| || || || || | ||||||||||| | ||| Sbjct 341 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 282 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| ||| ||| || || | | || | | || || | ||| || Sbjct 281 ATTCCCTCCTTGTCC-TGAATTTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCAAC 223 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | ||||| ||||| |||||||| Sbjct 222 TTCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450624682003160