Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq28624 637 7e-178 seq6 131 2e-25 >seq28624 Length=432676 Score = 637 bits (706), Expect = 7e-178 Identities = 1197/1749 (68%), Gaps = 24/1749 (1%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 |||||||| || || | ||| ||||| || ||||||| ||| | |||| ||| |||| Sbjct 59661 GCGGGTTTCGTCCGCAAATAATACATTCCAGTTTTCAAACCCATCTTCCAAGCGTGGAAA 59602 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||| | ||| ||| |||| || || | ||||| || | |||||| ||| Sbjct 59601 TGAATTGATGTCAATTTACCGTAATTTGGCTCAGCAACGTGAATGTTAAACGATTGGCTT 59542 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAG-GA-ATTT 68572 |||||||| ||||| ||||| ||||| ||||| | || || | ||||| || || | Sbjct 59541 TGATCGATAAAAGCACCTCTGTCTGCAGCCATCTGAATTGTAGT--TTTGACTGATATCT 59484 Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGG 68629 |||| | || || | | || ||||||| | || | || |||||||||||| Sbjct 59483 CCCATACTGTTTTGTATAGCTCCCTGATATCTTTCGGTATACTTTCAATATTTTGAATGG 59424 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 | ||| || | || || | |||||| || || |||| ||||| | || || | Sbjct 59423 AGCCATTATTGTGAATTATAAGATTCTTCATATCGTCATCCCACAGCTCGGCCTGTGTCA 59364 Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749 || ||| ||| ||||| |||| || | || ||||| |||||||| ||||| || | Sbjct 59363 AATCTCGAAGAAGATGGTGATTTACGACCTGGAATTCGCCAGATAAAACTCTGCGCTGAT 59304 Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809 | ||||| || | || || | || ||||| || || |||||||| ||||| || | Sbjct 59303 ATATATTTGAAGTGAACGGCTCAAAGGACTCATTGTTACCAAGAATTTGTGCAGTAGAAG 59244 Query 68810 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTT 68869 | || ||||| || || | || | |||||| | ||| ||| || ||||| |||| Sbjct 59243 CTGTAGGCATTGGAGCTAGTAACAGCGAATTTCTTAAACCGTGTTTTGCTATTTTTTCTT 59184 Query 68870 TTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAA 68929 | ||| | |||| | ||| || || | ||| | ||| | ||| ||||| | || Sbjct 59183 TGAGAGTTGTCCAGTTCCATAGGTCCGTTGGCGTTTTCTCCCACATATCATATTGCAAAA 59124 Query 68930 TTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTT 68989 | || ||||||||| || | ||||| || || || | | |||||||| || Sbjct 59123 TACCCTTACTTGCAGGGCTACCTTCATATGAACTGTATGGGCCATATTTTTCAGCTAATT 59064 Query 68990 CACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 69049 |||| ||||| |||||||| || |||||||| || || ||||| | | || || | Sbjct 59063 CACAGCTTGCTTCTAATGCTCCATAATAAATAGTCTCAAAAATTTGTTGGTTAAGTTTGA 59004 Query 69050 GTGCTTCTAGACTATCGAATGGATAATGTAAA-AGAATAAATGCATCTGCCAATCCCTGA 69108 |||| | ||| || | || || | | | | || ||| ||||| || ||||| ||| Sbjct 59003 TAGCTTTTTCACTTTCATACGG-TATTCTCATTATAACAAAAGCATCAGCTAATCCTTGA 58945 Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAA 69168 || |||||||| ||||||||||||||| |||| ||| ||| ||||| || | ||| ||| Sbjct 58944 ACACCAATACCAATAGGTCTATGTCTCATATTGGAATTTTTTGCTTCAGGGACAGGGTAA 58885 Query 69169 TAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGT 69228 ||||||| || || |||||||| | |||| | | | || || || || | | Sbjct 58884 TAATTAACTTCAATGATTTTATTCAAATTTTGTGTGATGATCTTGGTGACTTCTTTCAAT 58825 Query 69229 TTGAGAAA---ATCAAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGA 69285 || ||| || | || | || | || |||||||| | || | |||||||| | Sbjct 58824 TTTTCAAAGTTATAAGATTTGTCTTCGTTTACGAACATATTTAAAGCAATAGATGCTAAA 58765 Query 69286 TTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTA 69345 || || |||||||| |||| ||||| | |||| || || || ||||| ||||| || Sbjct 58764 TTGCACACTGCTACTTCATCAGAATCAGTGTATTCTACAATTTCCGTACAGAGATTGCTG 58705 Query 69346 CATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGA 69405 ||||| ||||| || | |||||| || || |||||| |||| || | ||| |||||||| Sbjct 58704 CATTTAATAGTGCCTAAATTTTGTTGGTTGCTCTTTCTGTTGCAAGAGTCTTTGTAAAGC 58645 Query 69406 ATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCA 69465 ||||| || || |||||||| | || | ||| | ||||| |||||| | | ||| Sbjct 58644 ATAAATGGTGTGCCAGTTTCCACTTGTGCTTCAACAATAGCTTTCCACAAAATTTGAGCC 58585 Query 69466 TTTATTACGGTCTTGTAA---CGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAAT 69522 | | | |||| | | ||| |||| |||||||| | ||| ||| || ||| Sbjct 58584 CTAACTTG---CTTGACAAATCTCTTTTCTTCTTCATATTTTTCATAAAGCTTCTCAAAT 58528 Query 69523 TCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACA 69582 || || |||||| || | | || ||||| |||| ||||||||| | ||| | Sbjct 58527 TCTTCCCCCCAACAGTCTGCAAGACCGGGACAGTCATGTGGACACATGAGGCTCCA---A 58471 Query 69583 TCATCATCCTT---AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | |||| ||| ||||| |||||| || || || || ||||| ||||| ||| || Sbjct 58470 TTCTCATTCTTTTCAACTCTTTTCATGAACAGGTCTGGGATCCAGAGAGCATAAAACAGT 58411 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 ||||||| | |||||| || || || || ||||| | ||| | ||| || | | | Sbjct 58410 TCTCTGGCACGTACTTCTTCCTTACCAGTGTTCTTTTTTAAATCCAAAAATTCGAATACA 58351 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 |||| ||||| |||||||| || || || | |||| || |||||||| || |||||| Sbjct 58350 TCAGCGTGCCAGGGTTCTAGGTAGATGGCAAAAGCTCCAGGACGTTTATTGCCACCCTGA 58291 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819 || | ||||| || |||||||| || || | || ||| |||| || ||||||||| | Sbjct 58290 TCAACATATCTTGCTGTGTTATTGTACACCCGCAACATGGGAACAAGACCATTAGAAACA 58231 Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879 ||||||||||||| ||| ||| | ||| | || | || | | | || ||||| Sbjct 58230 CCATTTGTTCCAGCAATGTAAGTACCTTTAGCTCTTATGCAATGGACATGAAGTCCTATG 58171 Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939 ||||| || ||||| || | ||||| | |||||||||||||| ||||| || || Sbjct 58170 CCTCCAGCAGACTTAGAAATCAATGCACATTGCTTCAATGTGTCATAGATACCTTCAATA 58111 Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 ||||||||| |||| || | ||||| || | ||| | || ||| | ||| Sbjct 58110 CTATCATCTTTCATAGCAATCAAGAAACAAGAGGATAGTTGTGGTCGTGGAGTAGCAGCA 58051 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 ||| | ||||||| ||||| ||||| ||||||| || | | |||||||| | | Sbjct 58050 GAAAAAAGTGTAGGACTGGCGTGTGTGAAGTATTTTTCTGATAATAAGTTGTATGTATTA 57991 Query 70060 ATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 || |||| || ||||| ||||||||| || | || ||||| | ||| || || Sbjct 57990 ATTGCTGCATCAATATCTTCTCCATGAATTCCAATAGAAACTCGCATAAGCATGTGTTGG 57931 Query 70120 GGTCGTTCT 70128 || |||||| Sbjct 57930 GGACGTTCT 57922 >seq6 Length=1691400 Score = 131 bits (144), Expect = 2e-25 Identities = 164/223 (74%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| | | ||| ||||| || || || | ||||||||| |||||||| || | Sbjct 1115151 CCTCATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCT 1115210 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| | |||||| ||||| || |||||||| ||||| || ||||||| Sbjct 1115211 TCAGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAAATG 1115270 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTA-TCATTATG--TATCCACTTCTGTGCCCAATCAG 39815 | |||| | ||| ||| | ||| | | | || |||||||| | | ||||| || | Sbjct 1115271 CGACAATGCGCTCGCCGAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGTCTG 1115330 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | |||||||| || || |||| ||||| | ||||| ||||| Sbjct 1115331 CCTTCTTCTTCACGCACGGCAGGGTTTCAACGGCATTGAAGAG 1115373 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||| | | |||||| || || | ||| ||||||||| ||||||| || || || || Sbjct 1115753 ATCTCTGATATATGTGTCAATGAGCAGGGAATACATTTCAGAATGGACATTCTCCATGGC 1115812 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || || || ||||| |||||||| |||||||| | ||| || || | | || | || Sbjct 1115813 AATTTGGAAACCGTAGAAACATCTCGCTTCAGTTACTTGCACTTCCTGAGAGAAGCGCTC 1115872 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | | ||| ||||| || || || || || ||||| || ||||||||||| || || Sbjct 1115873 AACTAGATTCTCATTTACAATGCCGTCTGATGCAGCAAAGAAGGCCAATACATGCTTGAT 1115932 Query 40057 AAA 40059 || Sbjct 1115933 GAA 1115935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686651406686280