Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 >seq6 Length=1691400 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| || |||||||| ||||| || || ||||| ||| | ||| || || Sbjct 1115923 GTATTGGCCTTCTTTGCTGCATCAGACGGCATTGTAAATGAGAATCTAGTTGAGCGCTTC 1115864 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | || ||||| ||| || | ||||| ||||||| || || || ||||||||||| || Sbjct 1115863 TCTCAGGAAGTGCAAGTAACTGAAGCGAGATGTTTCTACGGTTTCCAAATTGCCATGGAG 1115804 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| | ||||| |||||||| || || || || || || |||| |||| Sbjct 1115803 AATGTCCATTCTGAAATGTATTCCCTGCTCATTGACACATATATCAGAGAT 1115753 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/224 (70%), Gaps = 15/224 (7%) Strand=Plus/Minus Query 44042 TTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 || ||||| | ||||| | || |||| | || | || |||||||||||||| | || Sbjct 1115370 TTCAATGCCGTTGAAACCCTGCCGTGCG-TGAAGAAGAAGGCAGACTGGGCCCTGCAGTG 1115312 Query 44101 GATA------AATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 |||| || || || | || || || || ||||||| ||||| | ||| || Sbjct 1115311 GATAGCCAGCAAGTC---TGCAACATTCGGCGAGCGCATTGTCGCATTTGCTGCTGTAGA 1115255 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||||| || || || || |||||| | ||||||||| | |||||||| ||| | || Sbjct 1115254 GGGCATCTTTTTCTCTGGCAGTTTTGCGTCAATATTTTGGCTGAAGAAACGTGGTCTCAT 1115195 Query 44215 GCCTGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGA 44256 |||||| ||||| ||||| ||||| || || ||| ||||| Sbjct 1115194 GCCTGGATTGAC--TTTCAGCAATGAATTGATTTCTCGGGATGA 1115153 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||| | || || ||||| |||| ||||| ||||||||||||||||| || |||| Sbjct 1116466 TTCGTCATCTTCCCCATTCAGTATCCGGACATCTGGCAAATGTACAAAAAGGCCGAGGCT 1116407 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 || |||||||| | ||||||||||| || |||| Sbjct 1116406 TCGTTTTGGACTGTCGAAGAAGTTGACTTATCTAA 1116372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397310791561885