Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq28624 134 2e-26 >seq28624 Length=432676 Score = 134 bits (148), Expect = 2e-26 Identities = 661/1044 (63%), Gaps = 20/1044 (2%) Strand=Plus/Minus Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || ||| |||| || | ||||||||||| | |||||||||||| |||| |||||| || Sbjct 58969 AACAAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATGTCTCATATTGGA 58910 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 ||| || ||| || || ||| |||| ||||||| | || | ||||| Sbjct 58909 ATTTTTTGC---TTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATTCAAATTTTG 58853 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 || | ||||| |||| ||| | | ||||||| | | | ||| | ||||| || Sbjct 58852 TGTGATGATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAG---ATTTGTCTTCGTT 58796 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 || || | | || || ||||| |||||||| || || ||||| ||| || Sbjct 58795 TACGAACATATTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCAGAATCAGT 58736 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 ||| |||| |||||| ||||| | ||| | ||||| || || ||||| | |||||| Sbjct 58735 GTATTCTACAATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTTTGTTGGTT 58676 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||||| ||||||| | || ||||| ||||| | || || || || ||| |||| Sbjct 58675 GCTCTTTCTGTTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCCACTTGTGC 58616 Query 111400 TTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCC---T 111455 || | |||||| ||||| || || | | | || | | || ||| | || | | Sbjct 58615 TTCAACAATAGCTTTCCACAAAATTTGAGCC--CTA-ACTTGC-TTGACAAATCTCTTTT 58560 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 | | || || ||| || || ||||| || || ||| ||| | ||||| | Sbjct 58559 CTTCTTCATATTTTTCATAAAGCTTCTCAAATTCTTCCCCCCAACAGTCTGCAAGACCGG 58500 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | | | |||||| | || ||| | || | ||||| | |||||||| | Sbjct 58499 GACAGTCATGTGGACACATGAGGCTCCAATTCTCATTCTTTTCAACTCTTTTCATGAACA 58440 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 111635 ||||||| ||||| || | |||| || ||||| || | ||||| | ||| || Sbjct 58439 GGTCTGGGATCCAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCAGTGT 58380 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | | ||| || | || || | | ||| |||||||| || || || |||| || | Sbjct 58379 TCTTTTTTAAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCAA 58320 Query 111696 TAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 111752 || ||| || | ||| | |||| ||||| | |||||| || | || | Sbjct 58319 AAGCTCCAGGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTACACCC 58260 Query 111753 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG 111812 | | ||| |||| || ||||| || ||||||||| || ||| || || | Sbjct 58259 GCAACATGGGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCTTTAG 58200 Query 111813 CTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACT 111872 |||| | ||||| || | || || || ||||| |||| || || ||||| | Sbjct 58199 CTCTTATGCAATGGACATGAAGTCCTATGCCTCCAGCAGACTTAGAAATCAATGCACATT 58140 Query 111873 CCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAAC 111932 | | | || |||||||||| | || || || || | || || | ||| ||| Sbjct 58139 GCTTCAATGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAAACAAG 58080 Query 111933 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 111992 ||| | || |||| ||| ||| ||||| || || || || | ||||| |||| Sbjct 58079 AGGATAGTTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGTGAAGT 58020 Query 111993 TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGC 112052 || || | || |||||| | | | | |||||| ||||| || || || | Sbjct 58019 ATTTTTCTGATAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATGAATTC 57960 Query 112053 CGATTGCGACCCGCATGAACATGT 112076 | || | || ||||| | ||||| Sbjct 57959 CAATAGAAACTCGCATAAGCATGT 57936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627796668559200