Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq28624 147 3e-30 >seq28624 Length=432676 Score = 147 bits (162), Expect = 3e-30 Identities = 664/1040 (64%), Gaps = 28/1040 (3%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| | ||||| || | || || |||||||| ||||| |||||| | | | | | Sbjct 57936 ACATGCTTATGCGAGTTTCTATTGGAATTCATGGAGAAGATATTGATGCAGCAATTAATA 57995 Query 104289 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 104348 ||||| || | || || |||| ||||| | || || || || ||||| Sbjct 57996 CATACAACTTATTATCAGAAAAATACTTCACACACGCCAGTCCTACACTTTTTTCTGCTG 58055 Query 104349 GTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCA 104408 ||| ||| |||| ||| | ||| ||| ||| | || || | || || || || Sbjct 58056 CTACTCCACGACCACAACTATCCTCTTGTTTCTTGATTGCTATGAAAGATGATAGTATTG 58115 Query 104409 ACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTG 104468 | |||||||||| || | | | | ||||| || || |||| ||||| || || | Sbjct 58116 AAGGTATCTATGACACATTGAAGCAATGTGCATTGATTTCTAAGTCTGCTGGAGGCATAG 58175 Query 104469 GGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAAT 104528 | | || ||||| | ||||| || || ||| || ||||||||| | Sbjct 58176 GACTTCATGTCCATTGCATAAGAGCTAAAGGTACTTACATTGCTGGAACAAATGGTGTTT 58235 Query 104529 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAG 104588 | ||||| || |||| ||| | || || | || |||||| | ||||| |||| | Sbjct 58236 CTAATGGTCTTGTTCCCATGTTGCGGGTGTACAATAACACAGCAAGATATGTTGATCAGG 58295 Query 104589 CTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCA 104645 ||| | || ||| || | || |||| || || || |||||||| ||| | Sbjct 58296 GTGGCAATAAACGTCCTGGAGCTTTTGCCATCTACCTAGAACCCTGGCACGCTGATGTAT 58355 Query 104646 TGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC-GCGATCTC 104704 | || || | || || ||| ||| | || || | || |||| | || || Sbjct 58356 TCGAATTTTTGGATTTAAAAAAGAACACTGGTAAGGAAGAAGTACG-TGCCAGAGAACTG 58414 Query 104705 TTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGG 104764 || | ||||||||||| ||||| || |||||||| |||||||| ||| || |||||| Sbjct 58415 TTTTATGCTCTCTGGATCCCAGACCTGTTCATGAAAAGAGTTGAAAAGAATGAGAATTGG 58474 Query 104765 TCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGA 104823 ||| | |||||| | | || ||||| | || || | ||| || || ||||| Sbjct 58475 AGCCTCATGTGTCCACATGACTGTCCCGGTCTTGCAGACTGTTGGGGG-GAAGAATTTGA 58533 Query 104824 AGCCCTTTACACAAAGTACGAGGAAGAA----GGTCGGGCGACTGCGACGGTGCCAGCTG 104879 ||||| ||| || || |||||| | | | | | || | || ||| Sbjct 58534 GAAGCTTTATGAAAAATATGAAGAAGAAAAGAGATTTGTCAA--GCAA--GTTAGGGCTC 58589 Query 104880 CCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTT 104939 | |||||||||||||| | | | ||| || ||||| ||||||| ||||||| Sbjct 58590 AAATTTTGTGGAAAGCTATTGTTGAAGCACAAGTGGAAACTGGCACACCATTTATGCTTT 58649 Query 104940 ACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCA 104999 |||||||| | || ||| |||||| || ||| | ||||| || || || | || Sbjct 58650 ACAAAGACTCTTGCAACAGAAAGAGCAACCAACAAAATTTAGGCACTATTAAATGCAGCA 58709 Query 105000 ATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCG 105059 |||||||||| ||||| | |||| || || ||||| || ||||| || | | Sbjct 58710 ATCTCTGTACGGAAATTGTAGAATACACTGATTCTGATGAAGTAGCAGTGTGCAATTTAG 58769 Query 105060 CATCAATCGCTCTCCCCAAGTATGT--GGATCCAGAGACAAAGACATTTGATTATGAAAA 105117 |||| || ||| | || ||||| | | | ||||||| | | | | | |||||| Sbjct 58770 CATCTATTGCTTT----AAATATGTTCGTAAACGAAGACAAA-TCTTATAACTTTGAAAA 58824 Query 105118 ACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTT 105177 | | | ||||| || || | |||| |||| | || | | | ||||| |||| Sbjct 58825 ATTGAAAGAAGTCACCAAGATCATCACACAAAATTTGAATAAAATCATTGAAGTTAATTA 58884 Query 105178 TTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 105234 |||||| || ||| || || || ||||||||||| | || |||||| | || Sbjct 58885 TTACCCTGTCCCTGA---AGCAAAAAATTCCAATATGAGACATAGACCTATTGGTATTGG 58941 Query 105235 TGTTCAGGGTCTCGCGGATG 105254 |||||| || | || |||| Sbjct 58942 TGTTCAAGGATTAGCTGATG 58961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583042244887480