Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq91 86.0 7e-12 >seq91 Length=78992 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||| | ||| || | ||||||||| || ||||| ||||| || || Sbjct 27778 GTGAAAATGTAACGGGGGCTAGCCGAATCCTTGCCTCCGCTCAGACGGGTACCAAACTGA 27837 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||||||| | ||| | || || | |||||| |||| || ||||| || ||| Sbjct 27838 CCGCGAGGCTCCAATAAGTTAATATTATTAGACCCCACATAGTTCTGGGCCAAATTCACA 27897 Query 117425 ATCGT 117429 ||||| Sbjct 27898 ATCGT 27902 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| |||| ||| |||| ||||||||| || ||| || || |||||||| Sbjct 27778 GTGAAAATGTAACGGGGGCTAGCCGAATCCTTGCCTCCGCTCAGACGGGTACCAAACTGA 27837 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| | | ||| | || || | ||||| | ||||| |||||||||||| Sbjct 27838 CCGCGAGGCTCCAATAAGTTAATATTATTAGACCCCACATAGTTCTGGGCCAAATTCACA 27897 Query 152149 ATCGT 152153 ||||| Sbjct 27898 ATCGT 27902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547010951324600