Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq397 95.1 9e-15 >seq397 Length=962699 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| | || |||||||| || |||||| |||| Sbjct 56520 GACAAGGAAGGCATTCCTCCAGACCAGCAGAGATTGATTTTTGCGGGTAAACAACTGGAA 56461 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||||| |||||||||||||| ||| |||| | || ||||||||| Sbjct 56460 GATGGTCGCACTCTGTCCGACTACAACATCCAAAAGGAGTCCACTCTCCACTTGGTTTTG 56401 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | || || ||| Sbjct 56400 CGTCTTCGCGGTGGC 56386 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||||||| | ||||| ||| ||| || | || || || | Sbjct 58666 AATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTTGAGCCATC 58607 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || || || | ||| || ||| |||||| ||||| ||||| | || || Sbjct 58606 CGATACAATTGAAAAT--GTAAAAGCAAAAATTCAAGACAAGGAAGGCATACCACCTGAT 58549 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || ||||| || || || ||||| || |||| ||| | | || |||||| Sbjct 58548 CAGCAGCGATTGATTTTCGCGGGCAAGCAATTAGAAGACGGACGTACTCTTTCGGATTAC 58489 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| ||| | || | || |||||||| ||||| || Sbjct 58488 AATATTCAAAAAGAATCTACTCTTCACCTCGTCTTGCGTTTACGTGGAGG 58439 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| || | || || || || |||||| |||| Sbjct 56748 GACAAAGAAGGCATTCCCCCAGACCAGCAGCGTCTTATCTTCGCGGGTAAACAACTGGAA 56689 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| |||||||| || |||||||| |||||| ||| | ||| |||| || Sbjct 56688 GATGGTCGCACTTTGTCCGACTATAACATCCAGAAAGAGTCCACCCTTCATCTGGTGCTG 56629 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 56628 CGTCTCCGTGGTGGC 56614 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || ||||| ||| || || | || || ||| || Sbjct 57297 ATGCAGATCTTTGTTAAAACCCTGACTGGTAAAACCATAACCTTAGAGGTGGAACCTTCC 57238 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || || || || || ||||| || || |||| || ||| Sbjct 57237 GACACTATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 57178 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || | || || || || ||||||||||| || | |||| |||||||| || ||| Sbjct 57177 CAGCGTCTTATCTTCGCGGGTAAACAATTGGAAGATGGTCGCACTTTGTCCGACTATAAC 57118 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||| |||||| ||| | ||| |||| |||||| | ||||| ||| Sbjct 57117 ATCCAGAAAGAGTCCACCCTTCATCTGGTGTTGCGTCTCCGTGGTGGC 57070 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| || | || || || || |||||| | || Sbjct 57432 GACAAAGAAGGCATTCCCCCAGATCAGCAGCGACTTATCTTCGCTGGTAAACAACTAGAA 57373 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| |||||||| || |||||||| |||||| ||| | ||| |||| ||| Sbjct 57372 GATGGGCGCACATTGTCCGACTATAACATCCAGAAAGAGTCCACCCTTCATCTGGTATTG 57313 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 57312 CGTCTCCGTGGTGGC 57298 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||||| || || ||| ||||| | || || || | Sbjct 58209 ATGCAGATTTTCGTTAAAACTCTCACCGGTAAAACCATTACTCTCGAGGTGGAGCCTTCT 58150 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| || || || ||| ||||| |||||||| ||| |||| || || Sbjct 58149 GACACCATAGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGTATTCCACCAGACCAA 58090 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | | || ||||| || || |||||||| || | |||| ||||| || |||||| Sbjct 58089 CAAAGACTGATATTTGCTGGTAAGCAATTGGAAGATGGGCGCACTTTGTCAGACTACAAC 58030 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||| ||||| ||| | ||||| || || ||| | ||||| ||| Sbjct 58029 ATCCAGAAAGAATCTACTCTTCATTTAGTATTACGTCTCCGTGGTGGC 57982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355732387562679