Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq397 100 2e-16 seq87 96.9 3e-15 seq504 95.1 1e-14 seq27819 89.7 4e-13 >seq397 Length=962699 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || ||| |||||| || || ||||| |||| | || || | || || Sbjct 56632 CACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAAAGTGCGACCATCTTC 56691 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 || ||||| ||||| || ||||||||||||||||| | ||| | || ||||||||| Sbjct 56692 CAGTTGTTTACCCGCGAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 56751 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || || | | | | || || | ||||| |||| ||||| |||| Sbjct 56752 AATCTTGGCCTTCACATTTTCAATGGTGTCAGAAGGTTCCACCTCCAAGGTGATGGTTTT 56811 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| |||||||||||||| ||||| Sbjct 56812 ACCAGTCAGGGTTTTAACAAAGATCTGCAT 56841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||| ||| || ||| |||||| || || ||||| |||| | || || | Sbjct 57083 CGCAACACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAAAGTGCGACCA 57142 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||||| ||||| || |||||||||||||| || | ||| | || ||| ||| Sbjct 57143 TCTTCCAATTGTTTACCCGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCCTCCTTG 57202 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | | | | || ||| | ||||| || | || || Sbjct 57203 TCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGTTCCACCTCTAAGGTTATG 57262 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || ||||| |||||||||||||| ||||| Sbjct 57263 GTTTTACCAGTCAGGGTTTTAACAAAGATCTGCAT 57297 >seq87 Length=431742 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| |||||| || || || ||| || || || || || || | ||| || || | Sbjct 313623 CGTAGCACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGACCA 313564 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| || || || |||||||||||||||| || | || ||||||| Sbjct 313563 TCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTG 313504 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | || | | || || | |||||| || | ||||| Sbjct 313503 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCCACCTCGAGGGTGATT 313444 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | |||||||| || || || || ||||||||||| || Sbjct 313443 GTCTTTCCCGTTAGGGTCTTCACGAAGATTTGCATTTT 313406 >seq504 Length=80497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | || ||||| || ||| || || || ||||| || |||| Sbjct 72659 CCTCCTCTCAGACGAAGTACTAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 72600 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || || ||||| || || || ||||||||||||||||| | ||| Sbjct 72599 AGAGTGCGTCCATCTTCCAGTTGTTTACCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 72540 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || |||||| ||||| ||||| || | | || ||| | ||| || Sbjct 72539 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATAGTGTCGGATGGCTCAACT 72480 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || ||| | || || || || || || |||||||| ||||| Sbjct 72479 TCCAGTGTAATAGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 72433 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || | ||||| ||||| || ||| || || || || || || || | Sbjct 73115 CCTCCTCTCAATCTCAACACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGAC 73056 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| || | || || || ||||| ||||| || ||||||||||| ||||| | ||| Sbjct 73055 AGTGTACGGCCATCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGTTGGTCAGGGGGA 72996 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| |||||| ||||| ||||| || | | || || | ||| || Sbjct 72995 ATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTCTCAATAGTGTCAGATGGCTCAACT 72936 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || ||| | || || || || || || |||||||| ||||| Sbjct 72935 TCCAGTGTAATAGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 72889 >seq27819 Length=1354 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| || | || || ||||| | ||| ||||| || ||||||||||||| Sbjct 401 CCTCCTCGCAATCTCAATACTAAATGCAAAGTGGATTCTTTCTGGATATTATAATCGGAG 342 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || | ||| ||||| || || || |||||||||||||| | ||| Sbjct 341 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 282 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| |||||| ||||| ||| | | | | ||||| | || || Sbjct 281 ATTCCCTCCTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCAACT 222 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || ||||| |||||||| ||||| Sbjct 221 TCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 175 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||||| || | || ||||| | ||| ||||| || ||||||||||||| Sbjct 1085 CCACCTCTTAGACGAAGTACTAAATGCAAGGTGGATTCTTTCTGGATATTATAATCGGAG 1026 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || | ||| ||||| || || || |||||||||||||| | ||| Sbjct 1025 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 966 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| |||||| ||||| ||| | | | | ||||| | || || Sbjct 965 ATTCCCTCCTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTATCAGATGGTTCAACT 906 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || || ||||| ||||| ||||| Sbjct 905 TCCAAAGTGATGGTCTTCCCGGTGAGGGTCTTAACGAAGATCTGCAT 859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429388667797001