Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq852 273 2e-68 seq504 104 2e-17 seq27819 93.3 3e-14 seq397 82.4 6e-11 >seq852 Length=562639 Score = 273 bits (302), Expect = 2e-68 Identities = 644/964 (67%), Gaps = 19/964 (2%) Strand=Plus/Minus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 || ||||| || |||||||||||||| ||| || || || ||||||||| | || | Sbjct 33769 GCCTACTTCGTAGAATGGGGTGTGTATCCCCGGAAGTTCCCTGTGGACAAAATTCCAATT 33710 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 || || | ||||| | | ||||| || || ||||| ||||| || || ||||||||| Sbjct 33709 CCAAACCTCACGCATCTTTTATACGGGTTCATCCCAATTTGTGGGGGAGATGGCATCAAC 33650 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 ||| | || || |||||||| | ||||||||||| || ||| ||||||| Sbjct 33649 GACAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTTTGCAACGGTCTTGCAGCGGTCGA 33590 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || || ||||| |||||||| ||||| |||||||| | || ||||| ||||| || Sbjct 33589 GAAGACTTCAAGGTGTCCATCCACGATCCATGGGCCGCTCTCCAGAAACCACAAAAGGGA 33530 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 | | | ||||| || || ||||| |||||||| || ||| ||||| | || Sbjct 33529 TTATCATCTTGGAATGAACCTTACAAGGGCAACTTCGGTCAACTGATGTCATTGAAGCAA 33470 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTT- 109499 || | ||| || | ||||| || ||||| || || || ||||| | | || || || Sbjct 33469 GCCAGACCTGACTTAAAAATCCTGCCGTCTATTGGAGGTTGGACTCTTGCTGATCCTTTC 33410 Query 109500 TTATTTTATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTTTT 109559 || || | || | || | ||| || | | ||||| | || || ||||| | Sbjct 33409 TTCTTCTTTG-ATGACAAAGTGAAGAGGGACCGTTTCGTCAATTCAGTTAAGGAATTCCT 33351 Query 109560 ACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAGGG 109619 ||||||||||||||| || ||||| || |||||||| || || ||||||||||| Sbjct 33350 GATGACGTGGAAATTCTTTGATGGTGTCGATATCGATTGGGAATTCCCTGGCGGCAAGGG 33291 Query 109620 TGCCAATCCGAGTCTCGGCGACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTTA-- 109677 || || || | ||||||| | | | || || |||| || || | | ||| Sbjct 33290 CGCTAACCCTAACCTCGGCGGTCCTAAG---GATGGCGAAACCTA---TGTGCTCTTAAT 33237 Query 109678 -AAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAACAAAACGTACGAATT 109736 ||||| | || | ||| | |||| || | | || || ||| | |||||| | Sbjct 33236 GAAAGAACTTCGTGAGATGCTCAACGAGTTATCATCTGCTACTGGCAAGAAGTACGAGCT 33177 Query 109737 GACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCG-GCGC 109795 || || || || || |||| || || ||| | |||||||| ||| |||| || | Sbjct 33176 AACTTCAGCTATCAGTGCTGGTTGGGACAAGATTCAAGTGGTCGACTAC-AGTCGCGCAC 33118 Query 109796 AACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAACA 109855 | | || ||||| | || || || |||| ||||| ||||| || || ||||| ||| Sbjct 33117 AGAACTACATGGACCACATCTTCTTCATGAACTACGACTTCAAGGGAGCGTGGTCGAACG 33058 Query 109856 CGGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGTACA 109915 | |||| | || || || ||||||| || | |||||||| || ||| |||| Sbjct 33057 ACACCCTAGGTCACCAGACATCTCTGTACGCTCCAGCCTGGAATCCTAAGGAAACATACA 32998 Query 109916 CGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTATAA 109975 |||| ||| | | || ||| | |||| ||| ||| || || || | || Sbjct 32997 CGACTGATTTCGGTGTTAAATACTTGTTAGCTCAAGGAGTCAATCCGAAGAAGGTCGTAG 32938 Query 109976 TTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGT---CGTGCACGCCGACGACGCGA 110032 |||| || || |||||||| || || ||||| || || || | ||| ||||| | Sbjct 32937 TTGGTGTTGCTATGTACGGACGTGGATGGACTGGTGTTCACGGGTACGAAAACGAC---A 32881 Query 110033 ATCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTGG 110092 ||| || |||| || || ||||| || |||| || ||| || |||| ||||||| Sbjct 32880 TTCCCTTCACAGGCAATGCTTCTGGTCCTGTCAAAGGTACATGGCAAGACGGTGTGGTGG 32821 Query 110093 ACTA 110096 | || Sbjct 32820 ATTA 32817 >seq504 Length=80497 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||| ||||| | |||| ||| |||||||| ||||| ||||| || | | Sbjct 72887 CCTCCTCTCAATCTCAACACTAAATGCAGAGTGGATTCTTTCTGAATGTTGTAGTCTGAC 72828 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || | |||||||||||| ||||| ||| | ||||| | ||||||||| || Sbjct 72827 AGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGA 72768 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | || |||||||| |||||| |||||||| | | || || | | | | Sbjct 72767 ATCCCCTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATTGTATCCGATGGCTCAACT 72708 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | |||||||| ||||| || | ||| || | ||| || ||||| Sbjct 72707 TCTAATGTAATAGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 72661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||| || || | |||| ||| |||||||| || || ||||| || | | Sbjct 74122 CCTCCTCTCAATCTCAATACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAC 74063 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || | ||||||||||| ||||| ||| | ||||| | ||||||||| ||| Sbjct 74062 AGTGTACGGCCGTCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGA 74003 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165 | || |||||||| |||||| ||||||| Sbjct 74002 ATCCCCTCTTTGTCTTGAATTTTGGCCTTCACAT 73969 >seq27819 Length=1354 Score = 93.3 bits (102), Expect = 3e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||||||||||||| || | |||| ||| ||||| || || || ||||| || | | Sbjct 1313 CCTCCTCGCAATCTTAATACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGAC 1254 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || | |||||||||||| ||||| ||| | ||||| | ||||||||| ||| Sbjct 1253 AGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGA 1194 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165 | || |||||||| |||||| ||| |||| Sbjct 1193 ATCCCCTCTTTGTCCTGAATTTTGGCTTTGACAT 1160 >seq397 Length=962699 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 || || | ||| | ||| ||||||||||||||||||||||| | | ||| ||| Sbjct 58454 AAGACGAGGTGAAGAGTAGATTCTTTTTGAATATTGTAATCCGAAAGAGTACGTCCGTCT 58513 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 || ||||| |||||||| | || | | || || || || | |||||| ||||| Sbjct 58514 TCTAATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGTGGTATGCCTTCCTTGTCT 58573 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTT 101206 ||||||| ||| |||| | | || || | | | ||| | ||| |||||| Sbjct 58574 TGAATTTTTGCTTTTACATTTTCAATTGTATCGGATGGCTCAACTTCCAAGGTGATAGTT 58633 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || || || ||||| | ||||||||||||| Sbjct 58634 TTACCAGTTAAAGTTTTCACAAAAATTTGCATT 58666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409511132603043