Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq6 116 3e-21 >seq6 Length=1691400 Score = 116 bits (128), Expect = 3e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 ||||| ||||| || || ||| ||||||||||||||| | ||| || || ||||| || Sbjct 1115760 ATATATGTGTCAATGAGCAGGGAATACATTTCAGAATGGACATTCTCCATGGCAATTTGG 1115819 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937 || ||||| || ||||| ||||| |||||||| ||||| | | | || | || |||| Sbjct 1115820 AAACCGTAGAAACATCTCGCTTCAGTTACTTGCACTTCCTGAGAGAAGCGCTCAACTAGA 1115879 Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 || || ||||| || ||||| || ||||| || ||||| ||||| Sbjct 1115880 TTCTCATTTACAATGCCGTCTGATGCAGCAAAGAAGGCCAATACATG 1115926 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 5037 TTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGAC 5096 |||| ||| ||||||||||| |||||||||||||| || || || ||||||||||| | Sbjct 1116372 TTAGATAAGTCAACTTCTTCGACAGTCCAAAACGAAGCCTCGGCCTTTTTGTACATTTGC 1116431 Query 5097 CAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || || || ||||||||||| || | ||||| || Sbjct 1116432 CAGATGTCCGGATACTGAATGGGGAAGATGACGAA 1116466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426893579697341