Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq28624 648 0.0 seq6 114 2e-20 >seq28624 Length=432676 Score = 648 bits (718), Expect = 0.0 Identities = 1201/1749 (69%), Gaps = 26/1749 (1%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 |||||||| || || | ||| ||||| |||||||| | ||||| |||| ||| |||| Sbjct 59661 GCGGGTTTCGTCCGCAAATAATACATTCCAGTTTTCAAACCCATCTTCCAAGCGTGGAAA 59602 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || ||||| ||| ||| | || || || | ||||| || | ||| || ||| Sbjct 59601 TGAATTGATGTCAATTTACCGTAATTTGGCTCAGCAACGTGAATGTTAAACGATTGGCTT 59542 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAG-GA-ATTT 76980 |||||||| ||||| ||||| || || ||||| | || | || ||||| || || | Sbjct 59541 TGATCGATAAAAGCACCTCTGTCTGCAGCCATCTGAATTGTAGT--TTTGACTGATATCT 59484 Query 76981 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGG 77037 |||| | |||||| | | | ||||||| | || | || |||||||||||| Sbjct 59483 CCCATACTGTTTTGTATAGCTCCCTGATATCTTTCGGTATACTTTCAATATTTTGAATGG 59424 Query 77038 AACCACCATC-TGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTT 77096 | ||| || ||| || || |||||| ||||| |||| ||||| | || ||| Sbjct 59423 AGCCATTATTGTGA-ATTATAAGATTCTTCATATCGTCATCCCACAGCTCGGCCTGTGTC 59365 Query 77097 AAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTG 77156 ||| ||| ||| ||||| |||| || | || ||||| ||||| || ||||| || Sbjct 59364 AAATCTCGAAGAAGATGGTGATTTACGACCTGGAATTCGCCAGATAAAACTCTGCGCTGA 59305 Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 || ||||| || | || || | || |||||||| || | |||||| ||||||||| Sbjct 59304 TATATATTTGAAGTGAACGGCTCAAAGGACTCATTGTTACCAAGAATTTGTGCAGTAGAA 59245 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 || || ||||| || || | || | |||||| | ||| ||| || ||||| ||| Sbjct 59244 GCTGTAGGCATTGGAGCTAGTAACAGCGAATTTCTTAAACCGTGTTTTGCTATTTTTTCT 59185 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGA 77336 || ||| | |||| | ||| || || | || ||||| | ||| ||||| | | Sbjct 59184 TTGAGAGTTGTCCAGTTCCATAGGTCCGTTGGCGTTTTCTCCCACATATCATATTGCAAA 59125 Query 77337 ATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGT 77396 || || ||||| ||| || | ||||| || || || | | ||||||||| | Sbjct 59124 ATACCCTTACTTGCAGGGCTACCTTCATATGAACTGTATGGGCCATATTTTTCAGCTAAT 59065 Query 77397 TCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 77456 ||||| || ||||| |||||||| |||||||| || || ||||| | | || || | Sbjct 59064 TCACAGCTTGCTTCTAATGCTCCATAATAAATAGTCTCAAAAATTTGTTGGTTAAGTTTG 59005 Query 77457 TGTGCTTCAATACTATCAAACGGATAATGTAAA-AGAATAAAGGCATCTGCTAATCCCTG 77515 |||| ||| ||| |||| || | | | | || ||| ||||| |||||||| || Sbjct 59004 ATAGCTTTTTCACTTTCATACGG-TATTCTCATTATAACAAAAGCATCAGCTAATCCTTG 58946 Query 77516 AACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATA 77575 ||| |||||||||||||||||||||||| |||||||| |||| ||||| || | ||| || Sbjct 58945 AACACCAATACCAATAGGTCTATGTCTCATATTGGAATTTTTTGCTTCAGGGACAGGGTA 58886 Query 77576 ATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAG 77635 |||||||| || || |||||||| | |||| | | || || || || | Sbjct 58885 ATAATTAACTTCAATGATTTTATTCAAATTTTGTGTGATGATCTTGGTGACTTCTTTCAA 58826 Query 77636 TTTAAGAAA---ATCAAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAG 77692 ||| ||| || | || | | || | || ||||| || ||||| |||||||||| Sbjct 58825 TTTTTCAAAGTTATAAGATTTGTCTTCGTTTACGAACATATTTAAAGCAATAGATGCTAA 58766 Query 77693 ATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACT 77752 ||| || |||||||| |||| || | | |||| || || || ||||| ||||| || Sbjct 58765 ATTGCACACTGCTACTTCATCAGAATCAGTGTATTCTACAATTTCCGTACAGAGATTGCT 58706 Query 77753 ACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAG 77812 ||||| |||||||| | ||||||||||||||||||| | ||||| ||||| || ||||| Sbjct 58705 GCATTTAATAGTGCCTAAATTTTGTTGGTTGCTCTTTCTGTTGCAAGAGTCTTTGTAAAG 58646 Query 77813 AATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGC 77872 ||||| || || || ||||| | |||| ||| | ||||| |||||| | | | ||| Sbjct 58645 CATAAATGGTGTGCCAGTTTCCACTTGTGCTTCAACAATAGCTTTCCACAAAATTTGAGC 58586 Query 77873 TTTTA--TCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAAT 77930 | | | | || ||| | | ||| |||||||| ||| ||| |||||| Sbjct 58585 CCTAACTTGCTTGA--CAAATCTCTTTTCTTCTTCATATTTTTCATAAAGCTTCTCAAAT 58528 Query 77931 TCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCA 77990 || || |||||| || | | || || || |||| ||| ||||| | ||| | Sbjct 58527 TCTTCCCCCCAACAGTCTGCAAGACCGGGACAGTCATGTGGACACATGAGGCTCCAATTC 58468 Query 77991 CCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 78050 ||| | | ||||| |||||| || || || || ||||| |||||| ||| || ||| Sbjct 58467 TCATTCTTTTCAACTCTTTTCATGAACAGGTCTGGGATCCAGAGAGCATAAAACAGTTCT 58408 Query 78051 CGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCA 78110 | || | |||||| || || || |||||||| | ||| | ||| || | | |||| Sbjct 58407 CTGGCACGTACTTCTTCCTTACCAGTGTTCTTTTTTAAATCCAAAAATTCGAATACATCA 58348 Query 78111 GAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCT 78170 | ||||| |||||||| || || || | | ||||||| |||||||| || |||||||| Sbjct 58347 GCGTGCCAGGGTTCTAGGTAGATGGCAAAAGCTCCAGGACGTTTATTGCCACCCTGATCA 58288 Query 78171 ATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCA 78230 | |||||| || |||||||| || || | |||||| |||| || ||| ||||| ||| Sbjct 58287 ACATATCTTGCTGTGTTATTGTACACCCGCAACATGGGAACAAGACCATTAGAAACACCA 58228 Query 78231 TTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTAT 78286 |||||||||| ||| ||| | || | || | || |||||| || ||||| Sbjct 58227 TTTGTTCCAGCAATGTAAGTACCTTTAGCTCTTAT----GCAATGGACATGAAGTCCTAT 58172 Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346 ||||| || |||||| || | || || | |||||||| || |||||||| || || Sbjct 58171 GCCTCCAGCAGACTTAGAAATCAATGCACATTGCTTCAATGTGTCATAGATACCTTCAAT 58112 Query 78347 ACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 78406 ||| ||||| |||| || | ||||| || | ||| | | ||| | || Sbjct 58111 ACTATCATCTTTCATAGCAATCAAGAAACAAGAGGATAGTTGTGGTCGTGGAGTAGCAGC 58052 Query 78407 ATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTC 78466 | ||| | ||| ||| || || || || ||||||| || | || |||||||| | Sbjct 58051 AGAAAAAAGTGTAGGACTGGCGTGTGTGAAGTATTTTTCTGATAATAAGTTGTATGTATT 57992 Query 78467 AATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTG 78526 ||| |||| || || || | ||||||||| | | || ||||| | ||| || || Sbjct 57991 AATTGCTGCATCAATATCTTCTCCATGAATTCCAATAGAAACTCGCATAAGCATGTGTTG 57932 Query 78527 AGGTCTTTC 78535 || | ||| Sbjct 57931 GGGACGTTC 57923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 ||| || ||||| ||||| || |||||| | |||||||||||||| ||||| ||||| || Sbjct 57836 CTTGTTGTTTATCTTCAATAAATATGATCTCTCCAAAGTTTTAAATCCAAAGTAGTTATA 57777 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 | ||| |||| || |||| ||| |||||| ||| | ||||| | ||| Sbjct 57776 TTTAAAATCTCGGTCATAAACAATTGCAGAATCGAGTCTCTCTTTATTTTT 57726 >seq6 Length=1691400 Score = 114 bits (126), Expect = 2e-20 Identities = 160/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| | | ||| ||||| || || || | || ||||| || |||||||| || Sbjct 1115153 TCATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCTTC 1115212 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||||||||||| ||| ||| ||||| || || ||||| ||||| || ||||||||| Sbjct 1115213 AGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAAATGCG 1115272 Query 48285 GTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCC 48341 || | ||| ||| | | || | | || ||||||| | | ||||| || ||| Sbjct 1115273 ACAATGCGCTCGCCGAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGTCTGCC 1115332 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 |||||||| || || |||| ||||| | ||||| ||||| || Sbjct 1115333 TTCTTCTTCACGCACGGCAGGGTTTCAACGGCATTGAAGAGGAA 1115376 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 ||||||||| || || | ||| || || || || || || ||||| |||||||||||||| Sbjct 1115783 ATACATTTCAGAATGGACATTCTCCATGGCAATTTGGAAACCGTAGAAACATCTCGCTTC 1115842 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 || | || || ||| | | || || ||| | | |||||||||||| || || || Sbjct 1115843 AGTTACTTGCACTTCCTGAGAGAAGCGCTCAACTAGATTCTCATTTACAATGCCGTCTGA 1115902 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAA 48583 |||||||| || || |||||||| || || || Sbjct 1115903 TGCAGCAAAGAAGGCCAATACATGCTTGATGAA 1115935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694408498917280